KEGG   Edwardsiella piscicida C07-087: ETAC_15280
Entry
ETAC_15280        CDS       T02509                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
etc  Edwardsiella piscicida C07-087
Pathway
etc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:etc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ETAC_15280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:etc03021]
    ETAC_15280
   03400 DNA repair and recombination proteins [BR:etc03400]
    ETAC_15280
Enzymes [BR:etc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ETAC_15280
Transcription machinery [BR:etc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ETAC_15280
DNA repair and recombination proteins [BR:etc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ETAC_15280
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD RNA_pol_L_2
Other DBs
NCBI-ProteinID: AGH75177
Position
complement(3470169..3471158)
AA seq 329 aa
MQGSVTEFLKPRLVDIEQLSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVKVQGKDEVILTLNKSGIGPVTAADITHDGD
VEIVKPHHVICHLTDENASINMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEESIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq 990 nt   +upstreamnt  +downstreamnt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaactgagt
tcgacgcacgccaaggtgacccttgagccgttagagcgtggctttggccatactcttggt
aacgcactgcgccgtattctgctttcatctatgccgggttgcgcggtgaccgaggttgag
attgatggtgtactgcacgagtacagcaccaaagaaggcgtacaggaagatatcctggaa
atcctgctcaacctgaaagggctggcggtgaaagttcaaggcaaagatgaagtaattctt
accctgaataaatctggcattggccctgtgactgcagccgatatcacccatgatggtgat
gtcgaaatcgtcaagccgcaccatgtgatctgccatctgaccgatgaaaacgcatctatc
aatatgcgtatcaaagttcagcgtggtcgtggttatgtgccggcgtctgcccgaattcat
tcggaagaagatgagcgcccgatcggccgtctgttggtcgacgcctgctacagccctgta
gagcgtattgcctacaatgttgaagcagcgcgcgttgaacagcgtaccgacctggacaag
ctggtcatcgagatggaaaccaacggtaccattgacccggaagagtcaattcgccgtgcg
gcaactatcctggctgaacaacttgaagctttcgttgacctgcgtgatgtacgtcagccg
gaagtgaaagaagagaagcctgagttcgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgcgaactgcctgaaggcagaagctatccactacatcggtgat
ctggtacagcgtaccgaggttgagttgctgaaaacgccgaacctgggtaaaaaatctctt
actgagattaaagacgtgctggcctctcgcggtctctctctgggcatgcgcctggaaaat
tggccgccggcaagtatcgctgacgagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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