KEGG   Candidatus Endomicrobium trichonymphae Rs-D17: RSTT_342
Entry
RSTT_342          CDS       T05087                                 
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
  KO
K02340  DNA polymerase III subunit delta [EC:2.7.7.7]
Organism
eti  Candidatus Endomicrobium trichonymphae Rs-D17
Pathway
eti03030  DNA replication
eti03430  Mismatch repair
eti03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:eti00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RSTT_342 (holA)
   03430 Mismatch repair
    RSTT_342 (holA)
   03440 Homologous recombination
    RSTT_342 (holA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:eti03032]
    RSTT_342 (holA)
   03400 DNA repair and recombination proteins [BR:eti03400]
    RSTT_342 (holA)
Enzymes [BR:eti01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RSTT_342 (holA)
DNA replication proteins [BR:eti03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RSTT_342 (holA)
DNA repair and recombination proteins [BR:eti03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RSTT_342 (holA)
SSDB
Motif
Pfam: DNA_pol3_delta_C DNA_pol3_delta DNA_pol3_gamma3 DUF6470
Other DBs
NCBI-ProteinID: BAV58922
Position
545386..546405
AA seq 339 aa
MNILKMHDFNKLISLQKISSVYLLAGEESYFINMCLNKIEKFTATDDLNRDVFYASESSA
DDILNALQTLPFLSEIRVVIVKGVNKMKAIDAERLTDYLSNTIETSCLILLYFDNYKKET
VAKRREFINKCIASKNCVSVNCRKQYENEVKEFIKNEFAQKGKEVSYDVISRIIEENGND
LLNISNEIEKLSLFAGKNKKDITQEDLEKISGYTKETSIYALSSEIEARDLKKTMFVLEK
LLNEREEPVIILSAISSVVRKMLNAKSMIEEQGLSTAEIASALRIHDFYAETFFTNLKKY
STDTLKESLKTILKTDTAIKTGSNDAASALEKTILSICK
NT seq 1020 nt   +upstreamnt  +downstreamnt
atgaatatcttaaaaatgcatgattttaacaaattgatatctctccagaaaatatcatcc
gtttatttacttgcaggcgaagaatcttattttataaatatgtgtcttaataaaatagaa
aaattcaccgccacagacgatttaaacagagatgttttttacgcctcagaatcttcggca
gatgatattctaaatgctcttcagacacttccttttttaagcgagataagagtggttatc
gttaaaggtgtcaataagatgaaagcgattgatgccgagaggcttactgattatttgtca
aacactattgaaacgtcatgtcttatacttttgtactttgataattataagaaagaaaca
gtcgcaaaaaggagagaatttatcaataaatgcattgcttcaaaaaactgtgtttctgta
aactgtaggaaacaatatgaaaacgaagtaaaagaatttataaaaaatgaatttgcacag
aaaggcaaagaggtttcgtatgacgtaatttcaagaattattgaagaaaacggcaacgat
ttgttaaacatttcaaacgagatagaaaagttgtcattatttgcaggaaaaaataaaaaa
gatataacgcaagaggatttagaaaaaatcagcggatatacaaaagaaacaagtatatac
gctttgtcctctgaaatagaagcaagagatttaaaaaagactatgtttgttttagaaaaa
cttttaaatgaaagggaagaacccgtgataattctttccgcaatttcttcagtcgtaaga
aaaatgcttaatgcaaaaagcatgattgaagaacaaggactatctaccgctgaaattgct
tccgcactcagaatacatgatttttatgcagaaactttttttacaaatttaaaaaagtat
agtacagatacattgaaagaaagtctaaaaactatattaaaaaccgataccgcaatcaaa
accggaagtaatgacgcagcgtcggcattggagaaaaccatattatctatctgtaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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