KEGG   Escherichia coli O157 H7 TW14359 (EHEC): ECSP_4641
Entry
ECSP_4641         CDS       T00949                                 
Symbol
ligB
Name
(GenBank) DNA ligase, NAD(+)-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
etw  Escherichia coli O157:H7 TW14359 (EHEC)
Pathway
etw03030  DNA replication
etw03410  Base excision repair
etw03420  Nucleotide excision repair
etw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:etw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ECSP_4641 (ligB)
   03410 Base excision repair
    ECSP_4641 (ligB)
   03420 Nucleotide excision repair
    ECSP_4641 (ligB)
   03430 Mismatch repair
    ECSP_4641 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:etw03032]
    ECSP_4641 (ligB)
   03400 DNA repair and recombination proteins [BR:etw03400]
    ECSP_4641 (ligB)
Enzymes [BR:etw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ECSP_4641 (ligB)
DNA replication proteins [BR:etw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ECSP_4641 (ligB)
DNA repair and recombination proteins [BR:etw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ECSP_4641 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ECSP_4641 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     ECSP_4641 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ECSP_4641 (ligB)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB RNA_ligase
Other DBs
NCBI-ProteinID: ACT74363
Position
complement(4622495..4624177)
AA seq 560 aa
MKVWMAILISILCWQSSVWAVCPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGE
IFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKELA
TAGFTLTQRYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRGAKEPESRHWLPGQAEWL
VAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWL
GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHRFNLA
RKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatctgtgtgggcg
gtctgtccggcctggtcgccagccagagcacaggaagaaattttccgcctgcaacagcaa
ataaaacagtgggacgatgactactggaaggaaggaaaaagtgaggtggaagacggtgtt
tacgatcagttaagcgcccgtcttacgcagtggcaacgctgctttgtgagcgagccccgc
gacgtgatgatgccgcctttaaatggtgcggttatgcatccggttgcccatacgggtgta
cgcaaaatggcggataaaaacgcattaagtctgtggatgcgagaacgtagcgatctttgg
gtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaactgaac
aaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagttagctta
atttccgctgtgccgcaaaccgttagcgggcctttagccaacagtacgcttcagggggaa
atatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcccgcgca
aaagttgctggcctgatgatgcgccaggacgatagcgacacgctgaattctctgggcgtt
tttgtctgggcatggccggatggaccgcagttaatgaccgatcgtttaaaggagctggct
accgcaggttttactctaacgcagaggtatacccgtgcggttaaaaatgctgatgaggtt
gcgcgcgtacgcaatgagtggtggaaagcgaaattacccttcgtcaccgatggcgtggtt
gtgcgaggggcgaaagaacccgaatcccgccattggctaccaggccaggcagaatggctg
gtggcctggaaatatcaacctgtagctcaggttgccaaagtgaaggcgattcagtttgcg
gtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacctgtcatgctggatgat
aaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggatattgcg
cctggtgatcagatcctcgtcagccttgccggtcagggtattcctcgcattgatgatgtg
gtctggcgcggtgcagaacgtacaaaaccgacaccaccagaaaaccgctttaactcgttg
acctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtctggctg
gggtcaaaacaggttctggggctggatggcattggtgaggccggctggcgcgcgctgcat
cagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaattacag
aacacgccggggatcgcgaaaagtaaaagtgcgcagctatggcatcggtttaatctggct
cgtaagcagccttttactcgctgggtgatggcaatgggaataccgctaacccgggcggcg
cttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggagcagttctgg
cagcagctgccggggactggatcggggcgcgccagacaggttattgaatggaaggaaaat
gcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggttttgaacct
tag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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