KEGG   Escherichia coli UMNK88 (ETEC, porcine): UMNK88_4509
Entry
UMNK88_4509       CDS       T02001                                 
Symbol
gyrB
Name
(GenBank) DNA gyrase, B subunit GyrB
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
eun  Escherichia coli UMNK88 (ETEC, porcine)
Brite
KEGG Orthology (KO) [BR:eun00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:eun03032]
    UMNK88_4509 (gyrB)
   03400 DNA repair and recombination proteins [BR:eun03400]
    UMNK88_4509 (gyrB)
Enzymes [BR:eun01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     UMNK88_4509 (gyrB)
DNA replication proteins [BR:eun03032]
 Prokaryotic type
  DNA Topoisomerases
   UMNK88_4509 (gyrB)
DNA repair and recombination proteins [BR:eun03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      UMNK88_4509 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB GyrB_insert DNA_gyraseB_C GyrB_hook Toprim HATPase_c HATPase_c_3
Other DBs
NCBI-ProteinID: AEE59024
Position
complement(4380628..4383042)
AA seq 804 aa
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII
VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT
EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI
FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE
GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY
LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG
KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR
YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF
EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE
QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL
MGDAVEPRRAFIEENALKAANIDI
NT seq 2415 nt   +upstreamnt  +downstreamnt
atgtcgaattcttatgactcctccagtatcaaagtcctgaaagggctggatgcggtgcgt
aagcgcccgggtatgtatatcggcgacacggatgacggcaccggtctgcaccacatggta
ttcgaggtggtagataacgctatcgacgaagcgctcgcgggtcactgtaaagaaattatc
gtcaccattcacgccgataactctgtctctgtacaggatgacgggcgcggcattccgacc
ggtattcacccggaagagggcgtatcggcggcggaagtgatcatgaccgttctgcacgca
ggcggtaaatttgacgataactcctataaagtgtccggcggtctgcacggcgttggtgtt
tcggtagtaaacgccctgtcgcaaaaactggagctggttatccagcgcgagggtaaaatt
caccgtcagatctacgaacacggtgtaccgcaggctccgctggcggttaccggcgagact
gaaaaaaccggcaccatggtgcgtttctggcccagcctcgaaaccttcaccaatgtgacc
gagttcgaatatgaaattctggcgaaacgtctgcgtgagttgtcgttcctcaactccggc
gtttccattcgtctgcgcgacaagcgcgacggcaaagaagaccacttccactatgaaggc
ggcatcaaggcgttcgttgaatatctgaacaagaacaaaacgccgatccacccgaatatc
ttctacttctccactgaaaaagacggtattggcgtcgaagtggcgttgcagtggaacgat
ggcttccaggaaaacatctactgctttaccaacaacattccgcagcgtgacggcggtact
cacctggcaggcttccgtgcggcgatgacccgtaccctgaacgcctacatggacaaagaa
ggctacagcaaaaaagccaaagtcagcgccaccggtgacgatgcgcgtgaaggcctgatt
gcggtcgtttccgtgaaagtgccggacccgaaattctcctcccagaccaaagacaaactg
gtttcttctgaggtgaaatcggcggttgaacagcagatgaacgaactgctggcagaatac
ctgctggaaaacccaaccgacgcgaaaatcgtggttggcaaaattatcgatgctgcccgt
gcccgtgaagcggcgcgtcgcgcgcgtgaaatgacccgccgtaaaggtgcgctcgactta
gcgggcctgccgggcaaactggcagactgccaggaacgcgatccggcgctttccgaactg
tacctggtggaaggggactccgcgggcggctctgcgaagcaggggcgtaaccgcaagaac
caggcgattctgccgctgaagggtaaaatcctcaacgtcgagaaagcgcgcttcgataag
atgctctcttctcaggaagtggcgacgcttatcaccgcgcttggctgtggtatcggtcgt
gacgagtacaacccggacaaactgcgttatcacagcatcatcatcatgaccgatgcggac
gtcgacggctcgcacattcgtacgctgctgttgaccttcttctatcgtcagatgccggaa
atcgttgaacgcggtcacgtctacatcgctcagccgccgctgtacaaagtgaagaaaggc
aagcaggaacagtacattaaagacgacgaagcgatggatcagtaccagatctctatcgcg
ctggacggcgcaacgctgcacaccaacgccagtgcaccggcattggctggcgaagcgtta
gagaaactggtatctgagtacaacgcgacgcagaaaatgatcaatcgtatggagcgtcgt
tatccgaaagcaatgctgaaagagcttatctatcagccgacgttgacggaagctgacctt
tctgatgagcagaccgttacccgctgggtgaacgcgctggtcagcgaactgaacgacaaa
gaacagcacggcagccagtggaagtttgatgttcacaccaatgctgagcaaaacctgttc
gagccgattgttcgcgtgcgtacccacggtgtggatactgactatccgctggatcacgag
tttatcaccggtggcgaatatcgtcgtatctgcacgctgggtgagaaactgcgtggcttg
ctggaagaagatgcgtttatcgaacgtggcgagcgtcgtcagccggtagccagcttcgag
caggcgctggactggctggtgaaagagtcccgtcgcggcctctccatccagcgttataaa
ggtctgggcgagatgaacccggaacagctgtgggaaaccactatggacccggaaagtcgt
cgtatgctgcgcgttaccgttaaagatgcgattgctgccgaccagttgttcaccacgctg
atgggcgacgccgttgaaccgcgccgtgcgtttattgaagagaacgccctgaaagcggcg
aatatcgatatttaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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