KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10008378mg
Entry
EUTSA_v10008378mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12608  CCR4-NOT complex subunit CAF16
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EUTSA_v10008378mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10008378mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     EUTSA_v10008378mg
SSDB
Motif
Pfam: ABC_tran AAA_21 nSTAND3 AAA_29 AAA_25 AAA_28 SMC_N AAA AAA_23 NACHT AAA_15 AAA_5 AAA_18 AAA_30 SRP54 Zeta_toxin PduV-EutP AAA_33 AAA_22 DLIC AAA_24 DUF815 AAA_16 Arf AAA_14
Other DBs
NCBI-GeneID: 18994473
NCBI-ProteinID: XP_006418189
UniProt: V4L2Q6
Position
Unknown
AA seq 289 aa
MATTSGDDAIRVSGMEFAYEVDDPIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKH
MVGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAGEVPLQGDFSAEHMIFGVE
GIDPVRREKLIDLLDINLHWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVAR
MDLLEFFKEECDKRGATIVYATHIFDGLETWATHLAYIQNGELIRSSRMADINEMKISPN
LLSVVESWLRSETKLEKKKKKKKEPAAKWKPSPFDNSPFRSSRHMAYYR
NT seq 870 nt   +upstreamnt  +downstreamnt
atggcgacgacgagcggtgatgatgccatcagagttagcggtatggaattcgcttatgaa
gtcgatgatcctatattctttgacttcaacctcgatcttccagctggatctcgctgtcta
ttggttggcgccaatggatctggcaagacaaccttattgaaaattctggctggaaagcat
atggtgggaggaaagaacgttgttcaagttctgagccgttcggctttccatgatactcag
cttgtttgcagtggtgacttgtcttatcttggaggatcttggagtaaaaccgttggctca
gctggtgaggttcctctccaaggagacttttcagcagaacacatgatatttggagttgaa
gggattgatcccgtgagaagagaaaaattgattgatcttcttgatatcaatcttcattgg
cgtatgcataaggtttctgatgggcagaaacgccgagtgcagatatgcatgggactctta
catccattcaaggtgttattacttgacgaggtcacagttgacttagatgttgttgcaagg
atggatttgctggaattcttcaaagaagaatgtgataagagaggagccaccattgtatat
gcaactcacatattcgacgggctagagacatgggctacacatttggcctacattcagaac
ggtgagctgattcgttcatcgagaatggcagatatcaacgagatgaaaatttcacccaac
ctcctctcggtggtagaatcttggctccggtctgaaaccaaactcgagaagaagaagaag
aagaagaaggagcctgcggcaaaatggaaaccatctccatttgataactctccttttagg
tcatcgagacatatggcttattaccgatga

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