KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10018219mg
Entry
EUTSA_v10018219mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K13126  polyadenylate-binding protein
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03015  mRNA surveillance pathway
eus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    EUTSA_v10018219mg
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EUTSA_v10018219mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eus03019]
    EUTSA_v10018219mg
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10018219mg
Messenger RNA biogenesis [BR:eus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     EUTSA_v10018219mg
   mRNA cycle factors
    Stress granule specific factors
     EUTSA_v10018219mg
Spliceosome [BR:eus03041]
 Complex C
  Other components
   Complex C specific factors
    EUTSA_v10018219mg
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_7 Nup35_RRM SseB_C
Other DBs
NCBI-GeneID: 18007982
NCBI-ProteinID: XP_006390745
UniProt: V4MA56
Position
Unknown
AA seq 685 aa
MAAAVASGIAPTAMVDQVPHQPPVTVASPHSTPFPAVTQVAAAAAAAAAAEALQAHPNSS
LYVGDLDQSVNEAHLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPDDAMRAMDNLN
YTPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALFDTFSSFGTILSCKVAMD
VAGRSKGYGFVQFEKEETAQAAIDKLNGLLLNDKQVFVGHFVRRQDRSRGESRTVPRFTN
VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRCFGFVNFESPEAAAVAVEKMN
GISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE
MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEASRALNEMNGKMIGRKPLYIALAQRK
EERRNHLQNLFSHMRPGGAVSPMPSAMPGLHHHPPGGPITGPIHPMYIGQNGQGMVPSQP
MGYGYQLQFMPGVRPGAGPANFMMPYPLQRQNQPGPRVGFRRGATNMQQQFQQQQMMQNA
SSGMRFTGGAGNMRNGMDASAPQSIMPMPLDASAISHNASQHPHKPPLLPISKLTSALAL
ANPANHPQMLGEQLYPLVDKHEPVHAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALE
VLRVSANPPPAVSSVDDQFAINPTE
NT seq 2058 nt   +upstreamnt  +downstreamnt
atggcggcggcggttgcatctggaattgcaccaacggcgatggttgatcaagtccctcat
caaccaccggttacggttgcttctcctcactcgactccgttcccggctgtgactcaggta
gccgccgcggctgcagcggctgcggctgcagaggcgttgcaagcgcacccaaactcgtcg
ctttacgtcggagatctcgaccaaagtgtcaatgaggcacatctattggatctgttcaat
caagtggctccagtccagacagttagggtttgtcgggacttgactcgccgatctcttggt
tacgcttacgtcaatttcgctaatcctgatgatgcgatgcgagcgatggataacctgaac
tacactccgataagagacagacccatcaggatcatgctctcgaaccgtgatccgagcacg
agactgagcggaaaaggcaatgtttttatcaaaaacctcgacgcgtcgattgataacaaa
gccctgtttgatacattctcgagtttcgggactatcctctcttgcaaggtagccatggac
gtggcgggaaggtctaaaggttatggctttgtccagtttgagaaagaggaaaccgctcag
gctgctattgacaagcttaatgggttgttgcttaacgacaagcaagtctttgtgggccac
tttgtccgtcgtcaggaccgttctcgcggcgagagccgtacggtgccgcgtttcacaaac
gtttacgtcaagaatctccctaaagagatcactgacgatgagctcaagaagacgtttggg
aagtatggagatatctcaagtgcggttgtgatgaaagatcagagtgggaactcgaggtgt
tttggttttgtgaatttcgagtctcctgaagctgctgcggttgcggttgagaagatgaac
gggattagcctgggggaggatgtgttgtacgttgggagggctcagaagaagtctgagagg
gaagaagagctgaggcggaagtttgagcaagagaggataagcaggtttgagaaacttcaa
gggtcgaatctgtatttgaaaaaccttgatgatagtgtgaatgatgagaagctcaaggag
atgttttctgagtatgggaacgtgacctcgtgcaaggttatgatgaactcacaaggtttg
agcagagggtttggttttgttgcttattctaatcctgaagaagcttcaagagccttgaat
gaaatgaatggtaagatgataggaaggaagcctctttacattgcgttggctcaacgcaag
gaagagagaagaaatcaccttcagaacctgttctctcacatgagaccaggtggggcagtt
tcgccaatgccatcagcaatgcctgggttgcaccatcacccacctggtggtccaattact
ggaccaatccacccaatgtacattggccagaacggtcaaggtatggtaccttcacagcct
atggggtatgggtaccaacttcagttcatgcctggtgtgcgtccaggtgctggtccagcc
aacttcatgatgccataccctcttcagaggcaaaaccagcctggtcctcgcgttgggttc
aggcgtggtgctactaacatgcagcagcagttccagcaacaacaaatgatgcaaaatgca
agctcgggaatgagattcacgggaggtgctggtaatatgaggaatggaatggatgcatct
gctccacagagcatcatgcctatgccattggatgcatctgcaatctctcacaatgcttct
caacacccacacaagcctccactcctcccaatatctaagctcacctctgccttggctctg
gctaaccccgcaaatcacccacagatgcttggggagcagctttacccacttgtggacaag
catgagccagttcatgcggctaaagtgactgggatgttgctggagatggaccaagccgag
atcttgcaccttctcgagtcacctgaagctcttaaggctaaagtgtctgaggctttggaa
gttctcagggtctctgctaatccaccaccagctgtgtcttccgttgatgaccagttcgct
atcaacccaaccgagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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