KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10023214mg
Entry
EUTSA_v10023214mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EUTSA_v10023214mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:eus03021]
    EUTSA_v10023214mg
Enzymes [BR:eus01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EUTSA_v10023214mg
Transcription machinery [BR:eus03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     EUTSA_v10023214mg
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1 RNA_pol_Rpb1_7
Other DBs
NCBI-GeneID: 18010270
NCBI-ProteinID: XP_006391790
UniProt: V4MCZ2
Position
Unknown
AA seq 1465 aa
MEEDSEELQVPIATLKSIGFSISKDEDRVKMAAFMEVEAPNQVSDSRLGLPNPDGICRAC
GSKDRKTCEGHFGVIKFQYSVINPYFLKEIAALLNRFCPGCKNIRKKQSQSIEDRIERCR
YCTSNTGYPLMKFRVTTKEVFRRSGIVCEVSEDNLLKLKKRGVLTLPRDYWDFVRKDSNI
DESSLKPARRILTHAQVYGLLCGIDERLIRKDIPMFDSLSLTSIPVPPNGYRITELVNQF
TGPKLIFDERTRIYKKLVGFEGNLLELSSRVIECMQYSRLFSENVSSSQESANPYQKKSD
TPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPRRIAERLQVTENLNNWNRE
RLVTSCFHKLLLEKGEVYVRRGDSLVAIREIDDLQTGDNIFRTLRDGDTVLMNRPPSIHQ
HSLVAMSVRVLPTTSVVSLNPIICLPFRGDFDGDCLHGYVPQSVQAKVELDELVALDKQF
VNRQNGRNLLSLGQDSLTAAYLVNVEKNCFLNRAQIQQLQMYCPFQLPPPAIIRASSSSL
SSREEPQWTGMQLFGMLFPPGFDYSYPLNNVVVSNGELLSSSEGSAWLRDGEGNFIQGLL
KHDKGKVLDIIYSAQEMLSEWLLMRGLSVSLADLYFSSDSQSRRNLTDEITYGLQEAEQV
CNKQQLMVESRRGFLAVNGEEEEEEDLTADLARFCVERQRSATLSKLAVSAFKDAYRDVQ
ALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSSVALSFGFPRKLTCAAWNDP
TSPLRGAKGEDKTASESFVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLS
RKLMFFMRDIYAAYDGTVRNSFGNHLVQFSYETDSPVEEIAGEAVGSLSACALTEAAYSA
LDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSETLSKKKHGFEYGSLDIKNHLE
KLSFSEIVSTSMIIFSPRKFTRIPLSPWVLHFHISKKAMKQKQLNAESVVSSLNKQYTSR
KNELKLDLTDLQIQSTNHCSWDDKAMDDDRFCITVTVVEASHFSSLELDAIRLVLIPFLL
DSPVKGYREIKRVDILWADRPKAPKRNVNSLPGELFLKVTMYGDGGKKNFWSALLETCLP
VMDVIDWTRSHPDNIRQCCSVYGIDAGRSIFLANLESAVSDTGKTILREHLLLVADCLSV
TGEFVALNSKGWGKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDELQGSIDALAWGK
VPCFGTGDQFEIIISPKNHGFSTPVDVFDFLSSTATLPKTGKVRATNSMPKSDKVTVQPF
PLLDNAISKAINTLDGKGLAMSQLRNILTWDGIEKLSRSLKRILYNYEIDAPLNEKDERH
LMMALLFHPNRDEKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEII
APTKVNFYKSKYLNPKPVKENPKTR
NT seq 4398 nt   +upstreamnt  +downstreamnt
atggaagaagattccgaggagcttcaggtgcccatcgccactctaaaatccataggtttt
agtatttcgaaggatgaagatagagtgaaaatggcggctttcatggaggttgaagcaccg
aaccaagtcagtgattcccggttagggctccctaatccggatgggatttgcagagcatgt
ggcagcaaagatagaaaaacttgtgaagggcatttcggggttattaagtttcagtattcg
gtaattaacccttatttcctcaaggagatagctgcattgcttaacagattctgccctggc
tgtaaaaacattcgcaagaagcagtctcagagtattgaagaccggattgagagatgtaga
tactgcacttcaaatacaggttaccctctaatgaagtttagggtaactactaaagaagtc
ttcaggcgatccgggattgtctgtgaagtaagtgaagacaatctcttgaaactgaagaaa
cgaggagtcttaacattacctcgtgattattgggattttgtgcgtaaagactccaacatc
gacgaaagcagtttgaaaccagccaggcggattctaacgcatgcacaggtttatggtctg
ttgtgtgggattgatgagaggctcatcaggaaggacattccaatgtttgactctctttct
ctaacatctattccggttccaccaaatggttaccgtataaccgagttagttaaccagttc
actggaccgaaactaatttttgatgaacgtactcggatctacaagaaattagttggcttc
gaaggaaatttgcttgagttgagttctcgtgtgatcgaatgcatgcaatactccagactc
ttttctgaaaatgtgtcttcgagtcaagaatccgcaaatccttaccagaagaagtcagat
acaccgaagttgtgtggtctaaggttcatgaaagatgttcttcttggtaaaagaagcgac
catacattcagaacagttgttgttggtgacccttctttgaagcttaacgagattggtata
ccgaggaggatcgcagagaggcttcaagtaacagagaatctcaacaactggaacagagaa
cgtctcgtcacttcctgtttccacaaactgctgctcgagaaaggagaggtttatgtaaga
agaggagatagcttagtggctatcagagaaatcgatgacctacaaaccggagacaacatt
ttccggacattaagagatggagacacggtgttgatgaacagacctccttcgattcatcag
cactcgcttgtcgctatgtcggttagagtcctcccgaccacttctgttgtctccttgaac
ccgatcatctgtttgccgtttcgtggtgactttgatggagactgtcttcacggttacgtt
cctcagtctgttcaagccaaggttgagctcgatgagcttgtggctttggataagcagttt
gttaacaggcagaatggtcgtaacttgctttctttaggacaggacagcttgactgcagct
tatcttgttaatgtcgagaagaactgttttctgaaccgagctcagattcagcagctgcaa
atgtactgtccctttcagcttcctccgcctgcgatcatccgagcttcttcttcttctttg
agcagcagagaggagcctcaatggaccggaatgcagttgtttgggatgcttttccctccc
gggtttgattacagttaccctctgaacaatgtggttgtaagcaacggagagcttttgtct
tcctctgaaggctctgcttggttacgtgatggagaaggtaacttcatccagggtttgctc
aagcacgacaaagggaaagtgcttgatatcatttactccgctcaagaaatgctctctgag
tggttgctgatgcgtggacttagtgtgtccttggctgatttgtacttctcctctgactct
cagtctcggagaaacttgacagatgagataacatacggtttgcaggaagctgaacaagtc
tgcaacaagcaacagcttatggtcgagtcccgtagaggttttcttgcggttaacggagaa
gaagaggaggaggaagatttgactgctgatttggcacggttctgcgtcgagagacagaga
tcagcgacgctaagtaaacttgcagtgagtgctttcaaggacgcttatagagatgttcaa
gcattggcttataggtacggtgatcaatcaaattcattcttgatcatgtcaaaagctgga
agcaaaggaaacatagggaagctggttcagcacagcatgtgcattggtctgcagaattct
tcggttgcgttgtccttcgggtttccacgtaagctgacttgtgctgcttggaacgacccg
accagtccgcttcgtggtgcaaagggagaagacaaaaccgcttctgagtcctttgtccct
tatggagtcatcgagaactcgtttctaacgggtctgaatccgttggagtcttttgtgcat
tcagtgacaagccgtgatagctccttcagtggtaatgctgatctcccggggacacttagc
agaaagttgatgttctttatgcgtgacatatacgctgcttatgacgggacagtgagaaac
tcgttcggcaatcacttagtacagttttcttatgagactgatagtcctgtagaagaaata
gccggcgaagcagtagggtcactttctgcctgtgctctcactgaagctgcttacagtgct
ctagaccaacccattagccttcttgaaacttctccgcttctgaatcttaagaatgtgtta
gagtgtggatcgaagaaaggtcaacgagaacagacaatgtctctctatttgtctgaaaca
ctatctaagaagaagcacgggttcgaatatgggtcactggacatcaagaaccacttggag
aaactgagtttctcagagatcgtttcgacatccatgataatattctctccgaggaaattc
accaggatacctttgagcccatgggttctccattttcatatctccaagaaagcaatgaag
cagaaacaactgaacgccgaatctgttgtctcttcgttaaacaagcagtatacgagcagg
aagaacgaactgaagcttgatctaactgatttacaaatacaaagcacaaaccactgctct
tgggatgataaggcaatggatgatgatagattctgcatcacagttaccgttgtggaagcc
tcccatttttcttctttggaacttgatgctattagacttgtcttgatcccttttcttctc
gactctcctgtcaaaggctaccgtgagattaaaagagtggatattttatgggctgatcga
ccaaaagctcccaaaaggaacgtgaattctttgcccggtgagcttttcttgaaggttact
atgtatggagatggaggcaagaagaacttttggagtgctcttcttgaaacctgtcttcct
gttatggatgtgatcgattggactcgaagccatcctgataatatccgtcaatgctgctca
gtgtatggaatagacgctggacgaagcattttcctagcaaatttggagtctgcggtgtct
gatactggtaagacgatactacgtgaacatctgcttcttgtagctgattgtctctctgtt
actggagagtttgtggcattaaactccaaaggttggggtaaacaaagacaggtcgagtcc
actcctgcaccttttactcaagcatgcttctcgagcccaagtcaatgctttctcaaagct
gctaaggaaggtgtcagagatgagcttcaaggatctatcgacgcattagcttggggaaaa
gttccttgttttgggactggagatcaattcgaaatcatcatttctccaaagaatcatggg
tttagtacacccgtagatgtgtttgactttctgagtagtacagcgacacttccaaagaca
gggaaggtgcgtgcaacaaactccatgcctaaatcagacaaagtcacggtccagccattc
cctttgctcgataacgctatctccaaagcaatcaatacactcgatgggaaaggactcgcc
atgtcgcagctcagaaatatcttaacatgggacggcatcgaaaagctttctcgatcactc
aaacgaatactttacaattacgagatcgatgctccgttgaatgagaaggatgagagacat
ttgatgatggctctactcttccaccccaatagagatgagaaaattggaccaggcttccaa
ggaattaaggtggctaattctaaacatgggaatgctcgttgcttcgaggttgtaagaaca
gatggaacaacagaagatttctcttaccacaagtgtgtattgggagcaacagagatcatt
gcccctacgaaagtgaacttctacaagtccaagtatctaaacccgaaacccgttaaagaa
aacccgaaaacccgttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (7)   
   Pfam (7)   
All databases (24)   

Download RDF
DBGET integrated database retrieval system