KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10024349mg
Entry
EUTSA_v10024349mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13]
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10024349mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10024349mg
Spliceosome [BR:eus03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    EUTSA_v10024349mg
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    EUTSA_v10024349mg
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N AAA_22 DEAD AAA_19 nSTAND3 AAA_30 ABC_tran T2SSE SRP54 AAA_7 TsaE Flavi_DEAD AAA_23
Other DBs
NCBI-GeneID: 18030764
NCBI-ProteinID: XP_006414316
UniProt: V4MGS8
Position
Unknown
AA seq 913 aa
MESNDLKKTKTLEFAGEMHSTVQVRASVANLDLYKHSEDNRDRFIADEKIPRGTVSVSFK
LNSSKKSIRKRSRESEEEDDDDKVLGNYEIARLREVSRREYLKNREKKKIEELRDEIEFE
LSRFDGVKLTEKEEIEFRYKRELYELLKKTEDDVGRYRIPVAYDQEGVIDQKKRFAVATQ
RYGEGSSTRGMTEQEAWENHQAQKATVRFGAKNKKQASDGYEFVFDDLGGFVETSNEVET
EKHRDRDSRTVAEKDKEERNMLPIHAYRDELLKLIEENQVLVIVGETGSGKTTQIPQYLR
EAGYTKRGKIGCTQPRRIAAMSVASRVAQELGVKLGHEVGYSIRFEDCTSDKTVLKYMTD
GMLLRELLIEPKLDSYSVIMVDEAHERTLSTDILFGLVKDLANVRPDLRLIISSATLEAK
KFSEYFDSARIYMIPGRRYPVEKFFNKLPEADLLDTAIRTVFQIHETEPLGDILVFLTGQ
EEIEKAETKLKLRMIDLRTKSSEIIICPIYSNLPTELQAKVFEPAPKGSRKVVLATNIAE
TSITIDGIRYVVDPGYCKLNSYNPRTGMESLLVTPISKASAEQRAGRSGRTGPGKCFRLY
NVKDLEATTVPEVQRANLASVVLTLKSLGIEDVFNFDFMDPPPANALLKALELLYALGAL
DGKGEITKLGERMLEFPVDPMLSKMIVGSERYKCSGEMITIAAMLSTGNSIFYRPRQVRE
EYLADIARMNFYTENVGDHIALLRVYNSWKETNYSSQWCYENYIQSKSMRRARDIRDQLA
GLLEKIGVELTSNPNDLDAIKKAILAGFFPHSAKLQKDGSYRRVKEPQTVYVHPSSGLFT
ASPCKWLVYHELVLTTKEYMRHITEMKPEWLIEIAPHYYELKDIEEARPKKTQRSGRSPM
SKVGDTNKKVKRY
NT seq 2742 nt   +upstreamnt  +downstreamnt
atggagagcaatgatttaaagaagacgaagacccttgaattcgcgggagagatgcattcg
acagttcaggtacgagcatctgttgcgaatctggatttgtataagcatagtgaagataat
cgagataggtttatagcggatgagaaaatacctcgcggaactgtttctgtaagctttaaa
ttgaatagctcaaaaaagagtattagaaagagaagcagggaatcggaagaagaagatgat
gatgataaggttttggggaactatgagattgctaggttaagggaagtctctagacgagag
tatctgaagaacagggagaagaagaagattgaggagttaagggatgagatagaatttgag
ctttcacggtttgatggtgtgaaactcactgagaaagaagaaattgagtttagatacaag
agagaattgtatgagctgttgaagaaaacagaggatgatgttggtcgttatagaattcca
gttgcttatgatcaagaaggggttattgatcagaagaagagatttgctgtggcgacgcag
cgatatggtgagggaagcagcacgagaggcatgactgagcaagaagcttgggagaatcat
caggctcagaaagcgactgtgaggtttggtgctaagaacaagaagcaagcttctgatggg
tatgagtttgtgtttgacgacttgggaggttttgttgagacatctaatgaggtggaaacc
gagaagcaccgagatcgtgactcgagaacagttgcagaaaaggataaggaagagaggaat
atgcttccgattcatgcataccgggatgaattgctgaaactcattgaagaaaatcaggtt
cttgtgattgttggggagacagggtctggaaagacaacgcagataccgcagtatcttcga
gaagccggatacacaaagcgtggaaagatcggttgcactcagcctcggagaattgctgca
atgagcgttgcttcccgagtggctcaagaattgggtgtaaaactcggacacgaggttgga
tattctattagattcgaggactgtacttcagacaaaacagttttgaagtacatgactgat
gggatgctgctgcgagagctactcatagaaccaaaactcgatagctatagtgtcatcatg
gttgatgaggcgcacgaaagaacgctctccactgatattctgtttgggttagtgaaggat
ttagcaaacgttaggcctgatctgaggctaataatctccagtgcgacgcttgaagctaag
aagttctctgaatattttgattcagctcggatttatatgattccgggaagaagatatcca
gttgaaaagttcttcaataaattgcctgaagccgacctcttagacacggcgatacgcaca
gtgtttcagatccatgagactgagccacttggagacattttggttttcctcactggtcaa
gaagagattgaaaaagcagaaacgaagttgaagctaaggatgatagatttgcgtacaaag
agctctgagatcatcatctgtcctatctactcaaatctcccgaccgaactacaggccaaa
gtgtttgaaccggcccctaaaggatcgcggaaagttgtcctggcaacgaatattgcagaa
acatcgataacaattgatggaattaggtacgtagttgatccggggtactgcaagctcaac
tcctacaacccaagaaccggaatggagtcactgcttgtaactcctatttccaaggcttcc
gcagagcaacgagctggtcggtctgggagaacggggccgggtaaatgtttccggttgtac
aacgtcaaggacttggaggccaccacagtaccggaagtccaaagggcgaaccttgcaagt
gttgtacttactttgaaaagtcttgggattgaagatgtgttcaattttgatttcatggat
cctccacctgcaaacgctctattgaaggctctagagttgctctatgctctgggcgctttg
gatggaaagggtgagattactaagttaggggaaagaatgttggagtttccggttgatccg
atgctatcaaagatgattgttggttcggaaaggtacaagtgctcgggagagatgatcaca
atagccgccatgttgtctacagggaactccatcttttatcgacctaggcaagtacgtgaa
gaatatcttgccgacattgctcggatgaatttctacacagagaatgtcggagatcacatc
gcgttgctaagggtttacaattcatggaaggaaacaaactactcgagtcaatggtgctac
gagaactacattcagagcaagagtatgagaagagctagagatatacgtgatcagctggct
ggacttttagagaagattggagtagaacttacttctaacccgaatgatttagacgcgatc
aagaaggcgatcctggcgggattcttcccgcattctgcaaagttacagaaggatggatcg
tacagaagagtgaaagaacctcagacggtgtacgtacatcctagctcaggcttatttacg
gcgtcaccttgtaagtggttggtgtatcatgaactggtattgactaccaaggaatacatg
aggcatataaccgagatgaaacccgagtggctaattgaaatagctcctcattactacgag
cttaaagacatcgaagaagctcggccaaagaaaactcagagaagcggaagatccccgatg
tcgaaggttggtgatactaacaagaaagtaaagaggtactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (16)   
   Pfam (16)   
All databases (32)   

Download RDF
DBGET integrated database retrieval system