KEGG T04821: BFV63

Enterobacter hormaechei subsp. xiangfangensis: BFV63_08305

Entry

BFV63_08305       CDS       T04821

Name

(GenBank) transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

exf Enterobacter hormaechei subsp. xiangfangensis

Pathway

exf03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:exf00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BFV63_08305
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:exf03400]
    BFV63_08305
Enzymes [BR:exf01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BFV63_08305
DNA repair and recombination proteins [BR:exf03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BFV63_08305

SSDB

Motif

Pfam:

TRCF DEAD MFD_D3 UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C

Other DBs

NCBI-ProteinID:

AOP90909

Position

complement(1758578..1762024)

AA seq 1148 aa
MPEHYRFSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVVLVAPDMQNALRLHDEIR
QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRVQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVDSINLLPAHEFPTDKTAIELFRSQWRDRFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEMLWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRMLPD
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKEGYAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKSEGELEEIKVELIDRFGILPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVDPMWLIGLLQKQPQHFRLDGPTRLKFTQDLTERKTRMDWVRNFMR
QLEENAIA

NT seq 3447 nt +upstreamnt +downstreamnt
atgcctgaacactatcgtttttccttgcctgtaaaagcaggtgaccaacgccagctgggc
gaactgacaggcgcggcctgcgccacgctggtggcggaaattgccgagcggcatccaggg
ccggtggtgctggttgccccggacatgcaaaacgccctgcgcctgcacgacgaaattcgt
cagttcaccgacagtctggtattcagcctggccgactgggaaacgcttccctacgacagt
ttctctccgcaccaggagatcatctcctcgcgcctgtcgacgctgtatcagctccccacc
atgcagcgcggcgtgctgattgtgccggtgaataccctgatgcagcgcgtctgcccgcac
agctatttgcacggccatgcgctggtgatgaaaaaaggccagcgcctgtcgcgcgatgcc
ctgcgcgtgcagctggatggagccggctatcgacatgtcgatcaggtgatggagcacggc
gaatacgcgacgcgcggtgcgctgcttgatctctatccgatgggcagcgaccagccgtac
cgtctggatttcttcgatgatgagatcgacagcctgcgcgtgttcgacgccgacacccag
cgcacgctggaggaagtggactctattaatctgctgcccgcccatgagttcccgacggat
aaaaccgccatcgaactgttccgcagccagtggcgcgacaggttcgacgtgaagcgtgat
gccgaacatatctaccagcaggtcagcaaaggcacccttccggccgggatcgagtactgg
cagcccctgttctttaacgaaccgctgccggcgctgttcagctacttcccggcaaatacg
ctgattgttaacaccggggatatcgacgccagcgccagccgctttgaaagcgaaacgcgc
gcccgctttgaaaaccggggcgttgacccgatgcgtccgctgctgccgccggaaatgctg
tggctgcgtaccgacgagctcaacgccgagctgaaacgctggccgcgtatgcagctcaaa
accgattcgcttgccgataaggccgccaacactaacctcgccttccggatgctgcctgac
ctggccgttcaggcgcagcagaaatccccgctcgataatctgcgcaagtttcttgagtcc
ttcaccgggccggtggtcttctccgttgaaagtgaaggtcgccgtgaagcgctgggcgaa
ctgctgggaaggatcaaagtcgcgccaaagcgtattcttcgcctgagcgaagcgaccgga
aatggccgttacctgatgatcggcgccgccgaacacggattcattgatacgctcaataac
ctggcgttgatatgtgaaagcgacctgctgggcgagcgcgtcgcgcgccgtcgtcaggac
agccgtcgcaccatcaacccggacaccctgatccgcaacctggccgaactgcaccccggt
cagccgattgttcacctggaacacggtgtgggtcgctatcaggggatgaccaccctcgaa
gcaggtggcatcaaaggtgaatacctgatgctgacctacgctaacgacgccaagctgtat
gttccggtgtcgtccctgcatctgatcagccgctacgccgggggcgcggaagagaatgcg
ccgctgcacaagctgggcggcgatgcctgggcgcgtgcacgccagaaagcggcggaaaaa
gtgcgcgacgtggccgccgagctgctggatatttacgctcagcgtgcggccaaagagggc
tatgcgtttaagcatgataaagagcagtaccagctgttctgcgacagcttcccgtttgaa
actacgccggatcaggcccaggccatcaacgccgtgctgagcgacatgtgccagccgctg
gcgatggatcgcttagtctgcggcgacgtgggcttcggtaaaaccgaggtggcgatgcgc
gccgctttcctggcggttgagaacaacaagcaggtggcggtgctggtgccgaccaccctt
cttgcccagcagcacttcgacaacttccgcgaccgcttcgccaactggccggtacgtatc
gaaatgttgtcccgcttccgcagtgccaaagagcagacgcagatcctggaacaggcaagt
gaaggcaaaattgatattctgatcggcactcacaagctgctgcaaagtgacgtgaagtgg
aaagatctggggttgctgatcgttgacgaagagcaccgcttcggggtgcgccacaaagag
cgcatcaaagcgatgcgcgccaacgtcgacattctgaccctgaccgcaacgccgatcccg
cgcaccctgaacatggcgatgagcggcatgcgcgatctgtcgataatcgctaccccaccg
gcgcgccgtctggcggtgaaaacctttgttcgcgagtacgacaatctggtggtgcgcgag
gcgatcctgcgcgaagtgctgcgcggtggccaggtctattacctgtacaacgacgttgaa
aatattcagaaagccgccgacaggctggcagagctggtgccggaagcgcgcatcgccatt
ggtcacggccagatgcgcgagcgcgagctggagcgggtaatgaacgatttccaccaccag
cgctttaacgtgctggtgtgtaccaccatcattgagaccggaatcgacattccgacggcg
aacaccatcatcatcgaacgggcggatcacttcggcctggctcagctgcaccagctgcgc
gggcgggtcgggcgttcgcaccatcaggcctacgcctggctgctgacgccgcatccgaag
gcaatgaccaccgacgcgcaaaagcgtctggaagcgatcgcctcgctggaagatctgggc
gctggctttgcgctggcgacccacgacctggagatccgcggcgccggtgagctgctgggt
gaagaccagagcggctccatggaaaccatcggtttctcgctgtatatggagctgctggaa
aatgccgtcgacgcgcttaaagccggacgtgaaccgtctctggaagatctcaccagccag
cagaccgaagtggaactgcgcatgccttccctgctgccggatgattttattcctgacgtg
aatacccgtctgtcgttctacaaacgcattgccagcgcgaaaagcgaaggcgagctggaa
gagatcaaagtcgaactgattgaccgttttgggatattgcccgatgcggcgcgcaacctg
ctggatattgcccgcctgcgtcagcaggcgcagaagctgggcattcgcaaacttgaaggc
aatgagaaaggcggcgtaattgagtttgccgaaaagaaccacgtcgatccgatgtggctg
attggcctcctgcaaaaacagccgcagcatttccgtcttgatggccctacgcgtctgaaa
tttactcaggatctgacggaacgtaaaacccgcatggactgggtgcgtaactttatgcgt
cagttggaagagaacgccatcgcataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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