KEGG   Ficedula albicollis (collared flycatcher): 101816145
Entry
101816145         CDS       T02815                                 
Symbol
DDX42
Name
(RefSeq) DEAD-box helicase 42
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:5.6.2.7]
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101816145 (DDX42)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fab03041]
    101816145 (DDX42)
Spliceosome [BR:fab03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    101816145 (DDX42)
 Complex B
    101816145 (DDX42)
 Complex C
   U2 SnRNP specific factors
    101816145 (DDX42)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII DUF740 ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 101816145
NCBI-ProteinID: XP_005059918
Position
27:5314836..5331320
AA seq 1270 aa
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFQSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTQRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNSAGAESPKAAPAFSSGPGTSSSVPTFPSAGA
QGFGSASTGTREGGVGGTARERHGEPRNSRHSEAPRRGEGAGQRFGNEGQRFGSEGTGQR
FGSEGTGQRFGNEAQRFGNEGQRFGNDGQRYSNDGQRYNNDNQRYGNDGQRYNNDGQRYG
NDGQRYNNDGQRYGNDGQRYSNDGQRYNNDGQRYNNDGQRSGNDGQRFSNDGQRYNTDGQ
RFSNDGQRYNNDGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQRFSN
DGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQR
FSNDGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQRFSNDGQRFSND
GQRFSNDGQRYTNDGQRFSNDGQRYNTDGQRFSNDGQRYNTDGQRHGDGGGRHGDPSRHG
DSRHGDVHRHGEGRHFTELPGSGSRNSGDSRNSSEGRNGENRKEASSRDNKTDGFAVPEP
PKRKKSRWDS
NT seq 3813 nt   +upstreamnt  +downstreamnt
atgaattggaataaaggtgggcctggcacgaagagaggctttgggtttggtgggtttgcc
atcacccctggcaagaaggaggagcccaagctgtcgcagcagtcgcacagcgctttcggc
accgccggctcctcggcagcgttcgccaagtcggggcctcctcagctgccctccttctac
aagatcggctccaagagagccaactttgacgaggagaacgcgtactttgaggatgaggag
gaagattccagcaatgtggaattgccctacattcctgcagagaactcccccactcggcag
cagttccagtccaagtcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagaa
aaaaagaatgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcctat
ttccgctacatggccgagaaccccactgctggcgtggtgcaggaggaggaggaggataac
ctggagtatgacagtgatggcaatcccattgcacccagcaaaaaaatcattgatcctctt
ccacctattgaccactcagagattgaatacccaccgtttgagaagaatttctatgacgag
cacgaggagatcaccagcctgaccccgcagcaagtggtggagttacggcacaagctgaac
ctgcgggtctccggggctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatacaa
tgtcagggtgttccagtggcactaagtggcagagacatgattgggatagccaagactgga
agtgggaaaacagctgccttcatctggccaatgctgatccacatcatggatcagaaggag
ctggagccaggggatggtcccattgcagtgatcgtctgcccaaccagggagctctgccag
cagatccactcggagtgcaagcgctttggcaaggcctacaacctgcgctcggtggccgtg
tacggaggaggcagcatgtgggagcaggccaaggccctgcaggagggggcagagatcgtg
gtctgcacaccaggtcgtttgattgatcatgtgaagaagaaagctacaaacctgcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatggggtttgaatatcag
gtcagatcaatcgcgagccacgtacgtcctgacagacagaccctcctgttcagtgccacg
ttccgtaagaagattgagaagttggccagggatattctgattgaccccattcgggttgta
cagggagacattggagaggcaaatgaagatgtcactcagatcgtggagattttcccctct
gggcccagcaagtggaactggctgacgcagcgcctggtggagttcacctcctctgggagc
gtcctgctcttcgtcaccaagaaagccaacgcagaggagctggccaacaacctcaagcag
gaggatcacaacctggggctgctccacggggacatggaccagagcgagaggaataaagtc
atctcagaatttaagaaaaaggggatccccatcctggtggccactgatgtggcagcccga
ggattggacatcccttccatcaagactgtcatcaactacgacgtggctcgagacatcgac
acgcacacgcaccgcatcggccgcaccggccgcgccggggagaagggcgtggcctacacc
ctgctgacccccaaggacagcaacttcgctggggacctggtcaggaacctggagggtgcc
aaccagcacgtctccaaagagctgctggacttggcaatgcagaatccgtggttccggaaa
tcccgttttaaaggagggaagggcaagaagctgaacattggtggtggtggcttgggatac
cgcgagcggcctgggctgggctcagaaaacactgaccgtggaaacaacaacagtgtgatg
agcaactacgaggcctacaagccatccacaggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaacaaccaa
aagactgggagctctgccgctggtgccagcggctggaccagcgccgggagcctgaactcg
gtcccgacgagttcagcgcagcaaaactcggccggtgccgagagccccaaggcagcgcca
gccttcagcagcggcccaggcacctcaagcagcgtgcccaccttccccagcgccggcgcc
cagggctttggcagcgccagcaccggcaccagagagggcggcgtgggcggcaccgccaga
gagcggcacggcgagccccgcaacagccggcacagcgaggccccgcggcgcggggagggc
gcgggccagcgctttggcaacgagggccagcgcttcggcagtgagggcacaggccagcgc
ttcggcagtgagggcacaggccagcgcttcggcaacgaggctcagcgcttcggcaacgag
ggccagcgcttcggcaatgatgggcagcgttacagtaatgatgggcaacgctacaacaac
gataaccaacgctacggcaatgatggtcaacgatataacaatgatggccaacgctacggc
aacgatggtcaacgctataacaatgatggccagcgctatggcaacgatggccagcgttac
agtaatgatggccaacgctataacaacgatggccagcgttacaacaatgatggccaacgc
tctggcaatgatggccagcgcttcagcaatgatggccagcgttacaataccgatggccag
cgcttcagcaacgatgggcagcgttacaataacgatggccagcgcttcagcaacgatggc
cagcgcttcagcaacgatggccagcgcttcagcaacgatggccagcgcttcagcaacgat
ggccagcgcttcagcaacgatggccagcgcttcagcaacgatggccagcgcttcagcaac
gatggccagcgcttcagcaacgatggccagcgcttcagcaacgatggccagcgcttcagc
aacgatggccagcgcttcagcaacgatggccagcgcttcagcaacgatggccagcgcttc
agcaacgatggccagcgcttcagcaacgatggccagcgcttcagcaacgatggccagcgc
ttcagcaacgatggccagcgcttcagcaacgatggccagcgcttcagcaacgatggccag
cgcttcagcaacgatggccagcgcttcagcaacgatggccagcgcttcagcaacgatggc
cagcgcttcagcaacgatggccagcgcttcagcaacgatggccagcgcttcagcaacgat
ggccagcgcttcagcaacgatggccagcgctacaccaacgatggccagcgcttcagcaac
gatggccagcgttacaacaccgatggccagcgcttcagcaatgacggccagcgttacaac
actgatggccagcgccacggtgacggcggtggccggcacggtgacccctcccggcatggt
gacagccgccatggtgacgtccatcggcacggcgagggccggcacttcaccgaactgccg
ggcagcggcagccgcaacagcggggacagcaggaacagcagcgagggcaggaacggagag
aacaggaaggaggccagcagccgagacaacaagacagatggttttgctgtgccagagccc
cccaaacggaagaaaagccggtgggacagttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (67)   
   KEGG ORTHOLOGY (1)   
   RefGene (63)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (79)   

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