KEGG   Ficedula albicollis (collared flycatcher): 101820645
Entry
101820645         CDS       T02815                                 
Symbol
GTF2H2
Name
(RefSeq) general transcription factor IIH subunit 2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03022  Basal transcription factors
fab03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    101820645 (GTF2H2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    101820645 (GTF2H2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fab03021]
    101820645 (GTF2H2)
   03400 DNA repair and recombination proteins [BR:fab03400]
    101820645 (GTF2H2)
Transcription machinery [BR:fab03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     101820645 (GTF2H2)
DNA repair and recombination proteins [BR:fab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     101820645 (GTF2H2)
SSDB
Motif
Pfam: Ssl1 VWA_2 C1_4 VWA VWA_3 HscB_4_cys IBR
Other DBs
NCBI-GeneID: 101820645
NCBI-ProteinID: XP_005061117
UniProt: A0A803V285
Position
Z:42313149..42326979
AA seq 402 aa
MDDEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRLYEHHGQVRLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGLIVTKSKRAEKMTEL
SGNSKKHVTALKKAVDMNCSGEPSLYNSLNLAMQTLKHMPGHTSREVLVVLSSLTTCDPA
NIYDLIKCLKAVKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLMQHVSPPP
ASSTSECSLIRMGFPQHTIASLSDQDAKPSFSMAQLENNSDPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDVFQEVPLEEYKGERHCQGCQGEIKDQNVYIC
KVCQNAFCVECDLFVHDSLHCCPGCIHEHPAPVSEGKIAERQ
NT seq 1209 nt   +upstreamnt  +downstreamnt
atggatgacgagccagaacggaccaagcgctgggaaggaggctacgaaagaacatgggaa
attctcaaggaagacgaatccgggtcgttgaaagcaaccatcgaggacattctcttcaag
gcaaagaggaaaagactctatgaacaccatggacaagttcggcttggaatgatgcgtcat
ctttacgtggttgttgatggatcaagaacgatggaggaccaagacttaaaaccaaacaga
cttacttgcactctgaagttactggaatattttgttgaagagtactttgaccagaatcct
attagtcagattggcttaattgtaaccaagagtaaaagagcggaaaaaatgacagaactc
tcaggaaactcaaaaaagcatgtaactgctctgaagaaagcagtggatatgaactgtagt
ggagagccttctctatataattccctaaatttggccatgcaaaccttaaagcacatgcca
ggacatacaagcagagaggttttggtagtcctcagcagtctgacaacatgtgatccagcc
aacatctatgatctaattaagtgtttaaaagcagtaaagatcagagtatctgtcatcggc
ctaagtgctgaagttcgagtttgtacagtacttgcccgagaaactggtggaacataccac
gttattttagatgaaagtcattataaggaactgttgatgcagcatgttagtcctccacct
gccagttcaacttctgagtgctcccttattcgaatgggttttcctcagcatactatcgct
tctctatctgatcaagatgcaaagccttcctttagcatggcgcagttggaaaataacagt
gacccaggtcttacactgggtggatatttttgtcctcagtgcagagccaaatactgtgag
cttcctgtggaatgcaaaatctgtggtcttacattagtgtctgcacctcacctggctcgg
tcttaccatcacttgtttcctttagatgtctttcaggaagttccgctggaagaatacaag
ggagaacggcattgtcaaggctgccagggagaaataaaagatcaaaatgtgtacatatgc
aaagtgtgtcagaatgcgttctgtgtggaatgtgatctgtttgttcatgattcgctgcac
tgctgtcctggctgtattcatgagcaccctgctcctgtgtctgagggtaagattgctgaa
aggcaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (24)   

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