KEGG   Frankia alni: FRAAL0303
Entry
FRAAL0303         CDS       T00384                                 
Name
(GenBank) Formamidopyrimidine-DNA glycosylase.
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
fal  Frankia alni
Pathway
fal03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:fal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    FRAAL0303
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fal03400]
    FRAAL0303
Enzymes [BR:fal01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     FRAAL0303
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     FRAAL0303
DNA repair and recombination proteins [BR:fal03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     FRAAL0303
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS
Other DBs
NCBI-ProteinID: CAJ58980
RhizoBase: FRAAL0303
UniProt: Q0RTW7
Position
complement(326455..327201)
AA seq 248 aa
MSVASPQGRFTEGARRLDGRPLTDAEAHGKHLLLRFDHDQVLHVHLGIYGTYAFGPGPAP
VPTGAVRLRLTADTGYADLRGPNACELLEPGGVKTLRDRLGPDPLRGDADPDLAWRRIER
SRTPIAVLLLDQMVVAGPGNIYRAEVLFRAGVDPLLPGRDLTRRQWTAIWADLVTLMADG
VRTGRIDTVRPEHTPEAMGRPPRVDDHGGEVYVYRRAGQPCLICATTVLTNRLAARNLFW
CPGCQRPS
NT seq 747 nt   +upstreamnt  +downstreamnt
gtgtccgtggccagcccccaggggcggttcaccgagggcgcgcgccggctggacgggcgg
ccgctcaccgacgccgaggcgcacggcaagcatctgctcctgcggttcgaccacgaccag
gtcctgcatgtgcacctcggcatctacggcacctacgcctttggccccgggcccgctccc
gtgccgaccggcgccgtccggctgcggctcaccgcggacaccggctacgccgacctgcgc
ggtcccaacgcctgcgagctgctggaacccggtggagtgaagacgctgcgcgaccggctc
ggccccgatccgctgcgcggcgatgccgacccggacctggcctggcgccggatcgagcgc
agccgcaccccgatcgccgtcctcctgctcgaccagatggtcgtggccggcccgggcaac
atctaccgggccgaggtgctgttccgggccggtgtcgacccgctgctacccggacgggac
ctgacccggcggcagtggacggccatctgggccgacctggtcacgctgatggccgacggg
gtgcgcacgggccggatcgacaccgtgcgccccgagcacacccccgaggcgatgggccgt
ccgcccagggtcgacgaccacggtggcgaggtctacgtctaccgccgcgccggccagccc
tgcctgatctgcgccaccacggtgctgaccaaccgcctggccgcccgcaacctgttctgg
tgccccggctgccagcgaccgtcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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