KEGG   Francisella cf. novicida Fx1: FNFX1_1394
Entry
FNFX1_1394        CDS       T01937                                 
Name
(GenBank) Exodeoxyribonuclease V alpha chain
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
fcf  Francisella cf. novicida Fx1
Pathway
fcf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:fcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    FNFX1_1394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fcf03400]
    FNFX1_1394
Enzymes [BR:fcf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     FNFX1_1394
DNA repair and recombination proteins [BR:fcf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     FNFX1_1394
SSDB
Motif
Pfam: AAA_19 AAA_30 Viral_helicase1 UvrD_C_2 AAA_11 UvrD-helicase Helicase_RecD UvrD_C SLFN-g3_helicase ResIII SH3_13 AAA_22 DEAD Flavi_DEAD PhoH nSTAND3 NACHT AAA_12 TIP49 T2SSE AAA_7 TrwB_AAD_bind SRP54 ATP-synt_ab NTPase_1 AAA_28 FtsK_SpoIIIE PIF1 AAA_24 AAA_16 AAA_33
Other DBs
NCBI-ProteinID: AEE87780
Position
complement(1433202..1434959)
AA seq 585 aa
MYKTFHKACEQLADIRAIDFFFAKEVFDLAKNLPKSSKNNCHSGLDPESLKYSKNENVLF
HILIKLMHVYSHGHSCLKIADISNKTIFASEQSNQSDAKVGFKMPSSDKIANILDSLNYD
NLPIYFAKQYDSLYIKRLWNYEVEIANFIKSRTIQNTQQDNHIEEVVDKLFEPTDEIDWQ
KQAVIKSLNYNFSIISGGPGTGKTTTVAKLLLAIQMLNQNQQRIALLAPTGKVAQRMTES
LNSVLSKRVDNDSYLGLSNLEAQTIHRFLGLRPNSTYVKYNQQSKAPFDVIIVDEASMLD
MNIFIKLIRAVADNTKLILIGDTNQLPSVEAGSLLANFTHDKYGSITPYTTLLIKNYRSQ
QYINNLAASVLKGDVNIDSQQNENIKFHSLRNLDIYLREYAKRYSQLEKCRDYKEALTEL
NKFRILVANKNLEIGTDKLNQKIEKFMSKPIDSNYKGKPIMITQNSYSLGLFNGDVGIMW
SDDTGKLRAYFDGKDAKTFSLNMLPKFESVYAMTIHKTQGSEFDEVVIILPVEDNEALSK
QLLYTAITRAKYKLTIISEQSSLRDIAQKDIKRNSNISELVSLSD
NT seq 1758 nt   +upstreamnt  +downstreamnt
atgtataaaactttccataaagcttgtgagcaattagcagatattagagccatagatttt
ttctttgctaaagaggtgtttgatttagctaaaaatttacctaaaagctcaaaaaataat
tgtcattccgggcttgatccggaatctctaaaatatagcaaaaatgaaaatgtattgttc
catattttgataaagcttatgcatgtatatagccatggtcatagctgtttgaagatagca
gatatatcaaataaaactatttttgcttcagagcaaagtaatcagagtgatgctaaagta
ggctttaaaatgccaagctctgataaaattgcaaatattttagatagcttaaattacgat
aacttacctatatattttgccaaacagtatgattctttgtatattaaaagattgtggaat
tatgaggttgaaatagctaattttataaaatcaagaactatccaaaatactcaacaagat
aaccatattgaagaagttgtagataagctatttgaacctactgatgagatagattggcaa
aaacaggcagttatcaaaagtctaaattataattttagtattatctcaggtggacctggc
acaggtaagacaactacagtcgcaaagcttttacttgccatacaaatgcttaatcaaaat
cagcaaagaatagcgcttttagcaccaactggcaaggttgctcagagaatgacagaatcc
ttaaatagtgtattaagtaaaagggtagacaatgatagttatttggggttatctaattta
gaagcacaaactatacacagatttttaggcttaagaccaaactctacttatgttaaatat
aaccaacaatctaaagcaccattcgatgttattattgttgatgaagcttctatgcttgat
atgaatatttttatcaagttaattagagctgtagcagataatactaagttgatattaata
ggtgatactaatcagttaccatctgttgaggctgggagtcttttagcaaactttacacat
gataaatatggtagcattacgccatatacaacattacttatcaaaaactatcggtcacaa
caatatataaataatcttgcagcctcagtcctaaaaggcgatgttaatattgatagtcaa
caaaatgaaaatattaaatttcatagtctaagaaatttagatatttatttaagagagtat
gcaaagagatattcacagcttgaaaagtgccgtgactacaaagaggctcttaccgagcta
aataaatttagaatacttgtggctaacaaaaacctagaaattggtacagataagttaaat
cagaaaattgagaagtttatgtctaagcctatagattctaactataagggtaaaccaatt
atgataactcaaaatagttattcattagggttatttaatggagatgtagggattatgtgg
tctgatgatactggtaagctccgagcatattttgatggtaaagatgctaagacatttagt
ctaaatatgctaccaaaatttgaaagtgtttatgcgatgacaattcataaaactcaaggc
tcagagtttgatgaggtagttataatacttccagtagaggataatgaagcgctaagtaaa
caacttttgtatacagctattactagagcaaaatataaattaacgattatatctgaacaa
agtagcttaagagatattgctcagaaagatattaagagaaattcaaatatcagtgaatta
gttagcttgagtgattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (31)   
   Pfam (31)   
All databases (40)   

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