KEGG   Falco cherrug (Saker falcon): 102053827
Entry
102053827         CDS       T02911                                 
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
fch  Falco cherrug (Saker falcon)
Pathway
fch03008  Ribosome biogenesis in eukaryotes
fch03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fch00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    102053827 (XRN1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102053827 (XRN1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fch03019]
    102053827 (XRN1)
   03009 Ribosome biogenesis [BR:fch03009]
    102053827 (XRN1)
   03016 Transfer RNA biogenesis [BR:fch03016]
    102053827 (XRN1)
   03036 Chromosome and associated proteins [BR:fch03036]
    102053827 (XRN1)
Messenger RNA biogenesis [BR:fch03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     102053827 (XRN1)
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     102053827 (XRN1)
Ribosome biogenesis [BR:fch03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    102053827 (XRN1)
Transfer RNA biogenesis [BR:fch03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    102053827 (XRN1)
Chromosome and associated proteins [BR:fch03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    102053827 (XRN1)
SSDB
Motif
Pfam: XRN_M XRN_N XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer
Other DBs
NCBI-GeneID: 102053827
NCBI-ProteinID: XP_027667659
Position
Unknown
AA seq 1736 aa
MNGIIHQCSHPNDDDVHFRISEDKIFADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMN
QQRGRRFRSAKEAEDKIRKALEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKI
STDKSWQGVTVYLSGHETPGEGEHKIMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLT
SHEAHFALLREEVRFGGKKSQRACAPEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDI
ERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYRTYMAILPELGGYINENGHLNLKR
FEKYLARLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGIAAEEARKNKQKKQKGQENS
ICLAVLEKNEGEVTPKTVLEDEPEDDDLFETEFRQYKRTYYMTKMGVEVVSDDFLADQAE
CYVQAIQWILHYYYHGVQSWSWYYPYHYAPYLSDIRNISELKIKFELGKPFMPFEQLLAV
LPAASKDLLPKCYQHLMISQDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQA
MESCNKCLKEEEKRRNTHSACLMYWYDKDAEFQYMSPWPEKFPAIERCHTRHKTIPLDAW
HVEITHNKITKINKSALYFCGFPTLKHIKHKFYLRKSGVQVFQQSSHGENMMLEIIADEN
SNEQIVENVASLILGKRVFVNWPHLEEARVVAVSDGETKFYLEEPHGTQRLYMGNAVPPT
KVAYVGDKEQSMWLKEVQGISEHYQRRKGIIIHETSIVVYAQLLTGNRYQLRQNGEVYLE
KQWSKQVLPFVYQTVVKDIKAFDSRFSNIRTLDDLFPPGSAAFMLGSPYYGCMGEVQDSR
DVITEGRIRVVFNIPCEPQLDPLIQNQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFI
GRGSKKNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPEL
FNYIAKNSQEDIFYEDDIWPGEDENGAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIV
EKIEEEIEKCKQRKSNKKVRVTVKPHLLYRPLEQQNGVVPDRDAEYRLFDRVVNVRENFS
VPVGLRGTIIGIKGATRETDVLFEVLFDEEFLGGLTIRCSPARGYRLPSSALINLSHGSR
SEMGNQKLMAIVKPQPAVNNCNSYASDLSSVCSQKDHLGGLNHSPRSLFVPTQQLNGRQH
YNLRAENQGNSNSPQKGSFLSGNQKNKAQSKQDDEFCSIWQSLQGSGKSHHIQQNMHEKG
AVLPQEIKLGTGNQFYKPEFNDSSFKGQQRKQEPYKKFKEDSKVTRGESQPHNKISNKQN
FAGVNKYNVKLLKRNVSPNVPAIQKAAVDGPCTGGKKDNELESLLASLKISKENEAQTYS
KEARATNEEHLSPQSFAMKGTQMLKEILKIDGSDPETKNELKSQVNDVPALPSRQDCHGA
ASQYRQTKKMAAYMNKHHGTGGPQNTPALETGGHPFACPQPALSTVSELSRICSLVGMSQ
PDFSFLKTPQTMTVCHIKLSNGLLVHGPQCHSEAEAKEKAALFALQRLSSVGVNFPAPPP
PPPPVFPNYQPLGVPVPPGSIPPVFAQPPANIMPPSSHMFGPVSWGTPVPKHYYPGSYPG
SVSLAGTIPVGSHHQFIPLQVTKKRAANKKNFELKEFQSSPQAAPLKNEQPVSSDHIQQD
SSSAPLKPPPAAQSTVSFQDNVATPTVPHNKSTPNTSSKRKPRKLAVNFGAPKSSE
NT seq 5211 nt   +upstreamnt  +downstreamnt
atgaatggcattatacatcagtgttcacatccaaatgatgatgatgtacacttcagaatc
tcagaagataagatttttgctgatatttttcactatttggaagtactgtttcgcattatt
aaaccaaggaaggttttcttcatggcagttgatggagtggctccaagagcaaaaatgaat
cagcagcgtgggagacgttttcgatcagcaaaagaggcagaggacaaaataagaaaggca
ttagaaaagggagaaactctccctacagaagccagatttgactccaactgtattacacca
ggaactgaattcatggctagattgcatgagcatcttaaatattttgtaaatatgaagatt
tccacagacaaatcctggcaaggagtaacagtctacttatcaggccatgagactccaggg
gaaggtgagcataaaattatggagtttatcagatcagagaaagcaaagccccatcacgat
ccaaacacaagacactgtctctatggcttagatgctgacttgattatgctgggattaaca
agtcatgaggcacactttgcgctcttaagagaagaagtcagatttggtggtaaaaaatct
caaagagcatgtgcaccagaggaaacaacgtttcatttactgcacttgtcattgatgaga
gaatacattgattatgaattttcaccagtaaaagataagatttcctttgaatatgatatt
gaaaggataatagatgattggatcttaatgggtttccttgtaggaaatgattttattcct
catctacctcatttacacattaatcatgatgcactgccgctactttatagaacatacatg
gctatcttgccggaactgggaggttacattaatgaaaatgggcatctgaatttaaaacgc
tttgagaaatatctcgcaagattgtcagattttgatcgtgaacacttcagtgaagtcttt
gtagacctaaaatggtttgaaagtaaagtaggcaataaatacctcaacgaggcagctggt
attgcagcagaggaagccagaaaaaataaacaaaagaaacaaaagggtcaggaaaattct
atatgtttggctgttttagaaaaaaacgaaggtgaagtgactcccaaaactgtgttggaa
gatgaaccagaagatgatgatctgtttgaaactgagtttaggcaatacaaaagaacgtac
tacatgactaaaatgggtgtagaagtagtttctgatgacttcttggctgatcaagctgaa
tgttacgtccaggcaatacaatggattttgcattattattaccatggagttcaatcatgg
agctggtattatccttatcattatgcaccttatctgtcagatattcgcaacatcagcgaa
ctcaaaatcaaatttgaactgggaaaacctttcatgccatttgaacagcttcttgctgta
cttccagcagctagcaaagatcttctgcctaaatgctaccagcatttgatgattagtcaa
gactctcctattatagaatattatccaccggattttaaaactgacctgaatggaaaacag
caagaatgggaagctgtagtattaatcccgtttattgatgagaaacgactgctgcaggcc
atggaatcctgtaataagtgcctaaaagaagaggagaaacgaagaaatactcacagtgct
tgcttgatgtactggtatgacaaagatgcagagttccagtacatgtcaccatggccagag
aaattccccgcaatagaaagatgtcatacaagacataaaacaatacctttggatgcttgg
catgtagaaataacccacaataagataactaaaatcaacaagagtgcattatatttttgt
ggatttcctactttaaagcacattaaacataagttctaccttagaaaaagtggtgtacag
gtgtttcagcaaagcagccatggagagaacatgatgttggaaatcatagctgatgagaac
tcaaacgagcagatagtagaaaatgttgccagtttgatacttggaaagcgtgtttttgtt
aactggccacaccttgaagaagccagagttgttgctgtgtcagatggagaaactaagttt
tatttggaagaaccacatggcacacagaggctttacatgggaaatgcagtgcctccaact
aaagtggcatatgttggagataaggagcaaagcatgtggttaaaagaagttcaaggcatt
tcagagcactaccagagaagaaaaggaataattatccatgaaacatcaatagtagtgtat
gctcagttactcactggtaatagatatcagctacgccaaaatggagaagtttatttggag
aagcagtggtcaaaacaagttcttccttttgtttaccaaacagttgtcaaggatatcaaa
gcctttgactctcgtttttcaaacatcagaactttggatgacttatttcctcctggaagt
gcagcctttatgctgggatctccgtattacggctgcatgggagaagttcaagattcacgt
gatgtgatcacagaaggtagaattcgtgtagttttcaatattccttgtgaaccccagctt
gatcctttaatacagaaccagcataaatactctgtgaaatacaatcctgcatatattttg
gccagccgtcttggagtaagtggatatcttgtgtccagatttacagggagtatctttatt
ggaagaggatcaaagaaaaatcctcatggagatcacaaagcaaatgtggggctaaacctg
aagttcaataagaaaaacgaagaagttcctggctatactaagaaagttggaaatgaatgg
atgtattcttctgcagtagaacaactgcttgctgagtatttagaaagggtccctgaacta
tttaattatatagccaagaatagccaggaagatatcttctatgaagatgacatttggcct
ggagaggatgagaatggagctgagaaagttcaagaaattgttgcctggttaaaagcacat
cctgtgtctgctttgtctcgctcatcttgtgacttgcaaattttggatgcagccattgtt
gagaaaattgaagaagaaatagagaaatgcaagcagagaaagagcaacaagaaggtgcga
gtgactgtgaaaccccatttgctgtacagaccattagaacaacagaatggggttgttcca
gatcgagatgcagagtataggctgtttgaccgtgttgtcaatgtgagagagaacttttct
gttccagttggtcttcgaggtaccattataggaattaaaggagccactagagaaacagat
gtactcttcgaagttttgtttgatgaagaattccttggaggcctaaccataaggtgctca
cctgccagaggttatcgtctgccatcaagtgccttaattaacctgtcccatggtagtcgg
tcagaaatgggaaatcaaaaactgatggccatagttaaacctcagccagctgtgaataac
tgcaattcatatgcatctgatctgtcatctgtatgctcacaaaaagatcatctgggaggc
ctcaaccattctcctcgctccctttttgttcctactcaacaactgaatggaagacagcat
tacaatctcagggctgaaaatcagggcaactctaactcaccccagaaaggatcatttctg
agtggcaatcagaaaaataaagcacagagtaagcaagatgatgaattctgcagcatatgg
caatcattgcagggttctgggaagtctcaccacattcagcaaaacatgcatgagaagggt
gcagttctacctcaggaaatcaaactaggaactggcaatcagttctataagccagaattc
aacgacagcagctttaaaggtcagcaaagaaaacaggagccatataaaaaatttaaagaa
gattccaaagttacaagaggtgaaagtcagccacataataaaatatcaaacaaacagaat
tttgcaggtgtgaataagtacaatgtcaaacttttgaagcggaatgtaagtcccaacgtg
cctgcaattcagaaggctgcagtggatggtccctgtacaggcggaaagaaggacaatgaa
cttgaaagccttctagcttctttgaaaatttccaaagaaaacgaagcacagacttattcc
aaggaagcaagagctacaaatgaagaacatctgtcaccacagtcatttgctatgaaagga
actcagatgcttaaagagattttgaagatagatggctctgacccggaaacaaagaatgaa
ctgaaatcccaagttaatgatgttcctgctctccctagtagacaggattgccatggagct
gcctcgcagtatagacaaacaaaaaaaatggctgcttatatgaacaagcatcatggcact
ggaggccctcagaacaccccagcactggaaactggaggtcacccttttgcttgtccacag
cctgcactgtctactgtttctgaactttctcgtatttgttctcttgttggaatgtcacaa
ccagatttctctttcctaaaaacaccacagaccatgacagtttgtcacataaaactatca
aatggcttgttggttcacggaccacagtgtcattctgaagctgaagcaaaggagaaagct
gcactttttgctttacagcgtttgagttctgtaggagtaaacttccctgcgcctccacct
ccgcctccaccagtgtttccaaattaccagccactgggagttcctgtaccgcctggatct
attcctccagtatttgcacaaccccctgctaatataatgcctccatcatctcacatgttt
ggtccagtgtcctggggaactccagtgcctaaacattactatcctgggtcctatccagga
agtgtgtctcttgcaggaactataccagttggttctcaccaccagtttatacctctgcag
gtaactaaaaaaagggctgctaacaagaaaaactttgagctcaaggagtttcagagttcc
cctcaagctgcaccactaaagaatgaacagccagtgtcttctgaccacattcagcaagat
agttcttcagctcctttaaaacctcctccagctgctcaatccacagtttcatttcaagac
aatgtggctactccaaccgttcctcataacaaatcaacaccaaacacttccagcaagcga
aagccaagaaagctggctgtcaattttggcgcaccaaaatcttcagaataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (6)   
   Pfam (6)   
All databases (30)   

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