KEGG   Flavobacterium commune: BIW12_06525
Entry
BIW12_06525       CDS       T05006                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
fcm  Flavobacterium commune
Pathway
fcm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fcm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BIW12_06525
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fcm03019]
    BIW12_06525
   03016 Transfer RNA biogenesis [BR:fcm03016]
    BIW12_06525
Enzymes [BR:fcm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BIW12_06525
Messenger RNA biogenesis [BR:fcm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BIW12_06525
Transfer RNA biogenesis [BR:fcm03016]
 Prokaryotic type
  tRNA degradation factors
   BIW12_06525
SSDB
Motif
Pfam: RNB CSD2 OB_RNB OB_Dis3 S1 HTH_11 TBPIP
Other DBs
NCBI-ProteinID: AOZ99119
UniProt: A0A1D9P962
Position
1554266..1556446
AA seq 726 aa
MGKRLRKPAKKEKSFSDKIIKILSNSANKAFNYKQIAAKLEVDDTQSRNQIIKDLKILAA
EKKIIESEPGKYLIKAVSQDYYEGTIDMTSRKTAYFICEDFEEDVFIPTNNLNRALDKDK
VSVYVYNRRKGRRAEGEVIKVLERHKTDFVGVIDIQKNFAFVSTANPKMYTDIFIPKDNL
GEAQNGDVVLVHIEDWPKRADSPFGKVTKVLGRPGEHDTEIHAILAEYGLPAEFPIEVET
YAQKIDTSISEVEIAKRRDMRDTLTFTIDPKDAKDFDDALSFKKLENGNYEIGIHIADVS
HYLEEGTILDDEAYQRATSVYLVDRVVPMLPEVLSNFACSLRPQEEKYTFSAVFEITEKC
QVVNQWFGRTVIYSDQRFAYEEAQYIIETKDDVIPAEISLTGTSYKVAPEIVSATLKLDE
LAKIFRKKRMNDGAISFDKVEVKFNLDADGEPEGVYFKIAKDANHLIEEFMLLANKKVAE
YIGKQKKTFVYRIHDEPNEDKLIAMQTVIAKFGYKLDFRNPGDISKSLNKLMEDVSGKKE
QNLIDTLAIRSMSKAKYSTDNIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQFYLDGGKS
ADEELFETKCLHCSTMEGLATNAERDSIKYMQVKYMQDHQDQEFLGVISGVTEWGIYVEI
VENKCEGMVRIRDIKEDYYTFDEKQYALVGATSNKLLQLGDEIYVKVKNADLVKKQLDFN
FLRRSE
NT seq 2181 nt   +upstreamnt  +downstreamnt
atgggaaaaagattaagaaagcctgctaagaaagagaaaagtttctcagataaaattata
aaaatattatcgaatagtgctaataaagcctttaattataagcagatagcagcaaaatta
gaagtagatgatactcaaagcagaaatcaaattataaaggatttgaaaattcttgcagcc
gaaaagaaaattatagaatccgaacctggaaaatatttaatcaaagcggtaagtcaggat
tattatgagggaaccatagatatgactagtcgtaaaacggcttattttatttgtgaagat
tttgaagaagatgtttttataccaacgaataatttgaatcgtgctttagataaagataag
gtaagcgtttatgtttataatcgtagaaagggaagacgcgctgaaggtgaggttattaaa
gttttagaaagacataaaacggattttgtaggagtaattgatattcaaaagaactttgct
tttgtatcgactgctaatccaaaaatgtatactgatatttttattccaaaagataattta
ggagaggctcaaaatggggatgtggtattggttcatatcgaagattggcctaaaagagcc
gatagtccttttggaaaagtaacaaaagttttaggaagaccaggagaacatgatactgaa
attcatgctattttggccgaatatggtttacctgccgaatttccaattgaggtagaaact
tatgctcaaaaaatagatacttcaatatctgaagttgaaattgccaagcgtcgcgatatg
cgtgatactttgacttttaccattgatccaaaagatgcaaaggattttgatgatgcactt
tctttcaaaaaactggaaaatggaaattacgaaataggtatacatattgccgatgtttcg
cattatttggaagaaggaaccatcttagatgatgaagcttatcaaagagcgacttcggtt
tatttggtagatagggtagtaccaatgttaccagaagttttatcaaattttgcctgttca
ttacgtccacaagaagaaaaatatacgttttcggcagtatttgaaattaccgaaaaatgt
caggtggtgaatcaatggtttggacgaacagtaatctattcggatcaacgatttgcttac
gaagaagcacaatacatcatagaaacgaaagacgatgttattccggctgaaatttcgtta
acgggtacttcttataaagttgctccagaaattgtctcagcaacgcttaaattagacgaa
ttagctaaaattttccgtaaaaagagaatgaatgatggtgctatttcatttgataaggtt
gaagtaaaatttaatttggatgccgatggtgaaccggaaggtgtttattttaaaatagct
aaagatgccaatcatctgattgaagaattcatgcttttagccaataaaaaagtggcggaa
tacattggaaaacaaaagaaaacctttgtttatagaattcacgatgaaccaaatgaagat
aaattaatagcgatgcaaaccgtaattgctaagtttggttataaacttgatttccgtaat
ccaggtgatatttcaaaatcgttgaataaattaatggaagatgtaagtggtaaaaaagaa
cagaatcttattgatacactggcaattcgttcaatgagtaaagccaaatattctacggat
aatattggacattacggattagcttttgattattattctcattttacttcgcctattcgt
cgttatcctgacgttatggtgcatcgtttattacaattttatttagacggaggaaaatcg
gctgatgaagaattatttgaaactaaatgtttgcattgttccaccatggaaggtttagca
actaacgctgaaagagattctattaaatacatgcaggtaaaatacatgcaagatcatcag
gatcaggaatttttgggagttatttcgggtgtaaccgagtggggaatttatgttgaaatt
gtagaaaataaatgcgaaggtatggtccgaattagagacataaaagaagattattacaca
ttcgatgagaaacaatatgctttggttggagcaacttcaaataaattattacaattagga
gacgaaatttacgttaaagttaaaaatgccgatttagttaaaaaacaattggattttaat
tttttaagaagatcagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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