KEGG   Flavobacterium columnare: FCOL_08745
Entry
FCOL_08745        CDS       T01653                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
fco  Flavobacterium columnare
Pathway
fco03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FCOL_08745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fco03019]
    FCOL_08745
   03016 Transfer RNA biogenesis [BR:fco03016]
    FCOL_08745
Enzymes [BR:fco01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     FCOL_08745
Messenger RNA biogenesis [BR:fco03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     FCOL_08745
Transfer RNA biogenesis [BR:fco03016]
 Prokaryotic type
  tRNA degradation factors
   FCOL_08745
SSDB
Motif
Pfam: RNB CSD2 OB_RNB OB_Dis3 S1 HTH_11
Other DBs
NCBI-ProteinID: AEW86562
UniProt: G8X9J9
Position
2028944..2031121
AA seq 725 aa
MSKKPRRFSKGVRDFSGKILKLLSKEPNKPFNYKQIAARLDVDDTKSRNEIIKDLKILAS
KKDILEIEPGKYIVKAQSQDYYEGIIDMTARKTAYLLCEDFEEDVFIPFANLNHALHGDK
VKVYVYNRRKGKRPEAEVIEVIERERMEFVGVIDVQKNFAFVTTANPKMYTDIFIPKEKI
GEAKDGDVVLVKIEDWPKKADSPFGSVEKVLGRPGEHDTEIHAILAEYGLPYDFPVEVEA
YAKKLDTTIQPEEIAKRRDMRNVLTFTIDPKDAKDFDDALSFQVLENGNYEIGVHIADVS
HYVQEGTILDDEAFKRATSVYLVDRVVPMLPEVLSNFACSLRPHEEKYTFSAVFEINAKA
EVVNQWFGRTVIYSDQRFAYEEAQHIIETKGNTIPAEISLTEEAYIVPDAIVEATLKLDE
LAKILRRNRMNNGAISFDKVEVKFKLDENDEPVGVYFKIAKDANHLIEEFMLLANRKVAE
FIGKQKKTFVYRIHDEPDENKLMNLQGIISKFGYSLNFKSKDTISKSLNTLLENVAGKKE
QNMVDTLAIRTMSKAKYSTENIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQQYLDGAKS
ADEETYEEKCIHSSNMENSASNAERDSIKYMQVKYMQDHKDQEFLGVISGVTEWGIYVEI
IENRCEGMIRIREIKEDYYTFDEKQYALVGQVTKDLLQLGDEVLVKVKNADLVKKQLDYH
FIRRN
NT seq 2178 nt   +upstreamnt  +downstreamnt
atgagtaaaaagcctagaagatttagtaaaggagtgagagacttttcaggaaaaatttta
aagttgctttctaaagagcctaataagccttttaactacaaacagattgcagctcgttta
gatgtagatgatactaaaagtcgaaatgaaattataaaggacttaaaaattttggcttct
aaaaaagacattcttgaaatagaacctggtaagtatattgttaaggcacaaagtcaggat
tattatgaaggaatcatagatatgacggctcgtaaaacagcctatttactttgtgaagat
tttgaagaagatgtatttattccttttgccaatttgaatcatgctttgcatggcgataag
gtaaaagtgtatgtatataaccgtcgtaaagggaaacgacctgaggctgaagtgatagaa
gttattgaacgtgagcgaatggaatttgtgggagttattgatgttcaaaagaattttgca
tttgtaactactgctaatccaaagatgtacaccgatatctttattcctaaagaaaaaatt
ggtgaagctaaagatggtgatgtcgttttagtaaaaattgaagattggcctaaaaaagca
gattccccttttggaagtgttgaaaaagtattgggtcgtcctggggaacatgatactgaa
attcatgccattcttgccgagtatggtttgccttatgatttccctgtggaagttgaagcc
tatgctaaaaagttagatactactattcaacctgaagaaattgccaagcgtcgtgatatg
cgtaacgtattgacattcacgattgatcctaaagatgctaaggattttgacgatgccctt
tcttttcaagtgttagaaaatgggaattatgaaattggggtacatattgctgatgtatcg
cactatgttcaagaaggtactatcttagatgatgaagctttcaaacgcgctacttcagta
tatttagtggaccgagtggtacctatgttgccagaagtattgagtaattttgcctgttcg
ttacgtccgcatgaagaaaaatatactttttctgctgtttttgaaatcaatgcaaaagcc
gaagtagttaaccagtggtttggtcgtaccgtaatttattctgaccaacgttttgcttat
gaagaagcgcagcatatcattgaaacaaaaggaaatactattcctgctgaaatttcattg
accgaggaagcgtacatcgttcctgatgctatcgttgaagcgactttgaaattagatgaa
ttggctaaaattttaagaagaaaccgtatgaacaacggtgctatttcttttgataaagta
gaagtgaaattcaaattagatgaaaacgatgaacctgtaggggtttattttaaaatagca
aaagatgctaatcacttgattgaagagttcatgttgttagctaacagaaaagtagctgaa
ttcattggtaaacaaaagaaaacttttgtgtatcgtatccacgatgaacccgatgaaaac
aagttgatgaacttacaaggcattatttctaagtttggatattccttgaattttaaatca
aaagatacgatttctaaatccttgaatactttgttagaaaatgtggcaggtaaaaaagag
caaaatatggtggatactttagctatccgaaccatgagtaaagctaagtattctacggaa
aatattggacattatggattagcattcgattactattcgcattttacctctcctattcgt
cgttaccctgatgttatggtacaccgcttgttacaacaatatttagatggagctaaaagt
gccgatgaagaaacgtatgaagaaaaatgtatccattcatctaatatggaaaatagtgca
tccaatgctgaacgtgactctatcaaatatatgcaggtaaaatatatgcaagatcataaa
gaccaagagtttttaggcgttatttcaggagttacggaatggggtatttatgttgaaatt
attgaaaacagatgtgaaggaatgattcgcattcgtgaaataaaagaagattattatacg
tttgatgaaaagcaatatgctttagtgggtcaagtgactaaagatttattacagttggga
gatgaagttttggtaaaagtgaagaacgcggatttagtaaaaaaacaattggattatcat
tttattagaagaaattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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