KEGG   Fragilariopsis cylindrus: FRACYDRAFT_183679
Entry
FRACYDRAFT_183679 CDS       T04784                                 
Name
(GenBank) hypothetical protein
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FRACYDRAFT_183679
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fcy03019]
    FRACYDRAFT_183679
Enzymes [BR:fcy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     FRACYDRAFT_183679
Messenger RNA biogenesis [BR:fcy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     FRACYDRAFT_183679
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-ProteinID: OEU18948
JGI: 183679
UniProt: A0A1E7FLA1
Position
Unknown
AA seq 623 aa
RSDFLEQSNDFIRNLPNASWIAIDEEMTGISLPPGDVKKICKDESPADRYSTTKLVPERY
AIIQLGICLFEHKSSQETDTSDAASFHVRRYKFTLFPPADPNITREITLNPSSIHFLLEN
NMDLNLWAREGIPFCTKDTAAKLAEKFLKRQKQMGSTPTTATSSPAYKRRKVVLTKAEDK
EFHARVASSLREWLDTPIVGAQGAEGVSFLLPRCNSFLRRSLYESIERDYPYLVLETQSE
QIRVWRLTDEERERRTQRLLVEGYKKLIESKIGAQRIFLALSKACSGEPIANIAEHVILA
PNANDALMEFSPGKCISNRKIPLVVHNGLMDLLFLMTHFHSPKLPSDWDDCKRLIHSHFP
VVYDTKILASDYCLRDNTSRRTRLEDVYEQAVAEHPHWKHRAFCLNGQVQQDEQAHDAAY
DAYMTGVAFCELSYTIQNQRKIPPVDASSKFQLWDYCIDEFTFPRYLYGRNKLYFHLSPY
TIDFESPVSDPLGRGMSHESTFRIANIDPSVSSRDIINSLSGLFDSRNQRVNFDVIWVDD
TTFLVGAQIVSFNDDDERFKEHGKLLLDALKSSKFGKKETITLLRPTVEKPQNNIWNLWG
FFAEDKSETEEEQERPLKRQRFS
NT seq 1872 nt   +upstreamnt  +downstreamnt
aggtctgatttcttggaacaaagcaatgacttcatacgcaaccttcccaacgcttcctgg
atcgcgatcgatgaggaaatgactgggatatccttaccaccaggagacgtcaagaagatc
tgcaaagacgagtcacctgcggatcgatattctactacgaagcttgttccggagcgttat
gctattattcaattgggaatttgtttatttgaacataaatcatcacaggaaacagatacg
tctgatgcagcttcctttcatgtgcgaaggtataaattcacactatttccaccagctgat
cctaatattactcgagaaataacattgaacccgtcgtcaattcattttctgctagaaaat
aacatggaccttaacctatgggcacgagaaggaatcccattctgcacaaaagatactgcc
gccaaactagcagagaaatttttaaaacgtcagaagcaaatgggttcaactcccactact
gcaacatcatcaccagcctataaacgtcgtaaggttgtcttaactaaagccgaagataag
gagtttcatgctagagtcgcatctagtctgcgagaatggttggatacacccattgttggg
gcacaaggggcggagggtgttagttttttacttccacgatgcaattcctttttacgacgt
tctttgtatgaaagtattgaacgagattatccttatctagtcctcgaaactcagagtgag
caaatccgtgtatggcgacttacggatgaagaacgggaaagacggacacaacggttgttg
gttgagggatataaaaagttgattgaatcaaaaattggagcacaacgtatctttttggca
ttgtcaaaagcatgtagcggcgaaccaattgcaaacatagccgaacatgtaatcttggca
cctaatgcgaatgacgcattgatggaattctctccagggaagtgcatttcgaatagaaag
attcctcttgtcgtgcacaatgggttaatggatctcctatttcttatgacacatttccac
tcccctaaacttccaagcgattgggatgattgcaaacgtcttattcattctcatttccca
gtggtatatgatacgaaaattttagcttcggattattgtttgagggacaacacatctcgt
aggactcgccttgaggatgtttatgaacaggctgttgctgagcatccgcattggaagcat
cgcgccttttgtctcaacggacaagtccaacaagatgaacaggctcatgatgccgcgtat
gatgcgtacatgacgggagttgcgttctgtgaactttcttatactattcaaaaccaaaga
aaaatcccacctgtggacgcaagctccaaatttcaattatgggattattgcatcgatgaa
tttacatttccaaggtacttatacgggcggaacaagctatactttcatttatcgccgtac
acgattgatttcgaatctccagtgtcagatccacttggaaggggtatgtctcatgaatca
actttccgtatagctaatatcgatccatcagtgtcatcacgggacattataaactccctt
tctggacttttcgattctcgtaaccaacgagtaaattttgatgttatttgggtagacgat
actacattcttggttggcgctcaaatagttagtttcaatgatgacgacgaacgctttaaa
gagcacggtaaactattgcttgacgctttgaagagtagtaaatttgggaagaaagaaacg
atcacactacttcgtccgaccgtcgaaaaacctcaaaataatatctggaatctatggggt
ttttttgctgaggataaaagcgaaacggaagaagaacaggaacgaccgctcaagagacaa
agattttcctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (107)   
   KEGG ORTHOLOGY (1)   
   RefGene (103)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (115)   

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