KEGG   Fragilariopsis cylindrus: FRACYDRAFT_274639
Entry
FRACYDRAFT_274639 CDS       T04784                                 
Name
(GenBank) hypothetical protein
  KO
K10756  replication factor C subunit 3/5
Organism
fcy  Fragilariopsis cylindrus
Pathway
fcy03030  DNA replication
fcy03410  Base excision repair
fcy03420  Nucleotide excision repair
fcy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fcy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FRACYDRAFT_274639
   03410 Base excision repair
    FRACYDRAFT_274639
   03420 Nucleotide excision repair
    FRACYDRAFT_274639
   03430 Mismatch repair
    FRACYDRAFT_274639
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fcy03032]
    FRACYDRAFT_274639
   03036 Chromosome and associated proteins [BR:fcy03036]
    FRACYDRAFT_274639
   03400 DNA repair and recombination proteins [BR:fcy03400]
    FRACYDRAFT_274639
DNA replication proteins [BR:fcy03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    FRACYDRAFT_274639
  DNA Replication Termination Factors
   ELG1-RFC complex
    FRACYDRAFT_274639
Chromosome and associated proteins [BR:fcy03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    FRACYDRAFT_274639
DNA repair and recombination proteins [BR:fcy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     FRACYDRAFT_274639
  Check point factors
   HRAD17(Rad24)-RFC complex
    FRACYDRAFT_274639
SSDB
Motif
Pfam: AAA DNA_pol3_delta2 Rad17 Rep_fac_C AAA_22 AAA_16 AAA_assoc_2 RuvB_N AAA_11 AAA_14 AAA_3 AAA_5 ATPase_2 AAA_24 AAA_30 DUF815 DEAD AAA_7 bpMoxR AAA_19 ResIII AAA_18 DNA_pol3_delta TIP49 MCM PhoH TniB Mg_chelatase
Other DBs
NCBI-ProteinID: OEU20002
JGI: 274639
UniProt: A0A1E7FPB2
Position
Unknown
AA seq 355 aa
MRQKINDDSQLPWVEKYRPQRLEDLVAHENIINIITNLIDNDNLPHLLLYGPPGTGKTST
IVAAAKRMYGASKYNSMTLELNASDARGINVVRNEIKEFAGTKQLFSKGIKLIILDEADA
MTNDAQFALRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLLPDQIRGRLEEV
AKEEKVPLTEDGVEAILDLSCGDMRRVLNLLQSTAMSNLPSTSTSTSTDMEIDGDEKTTT
TTIPVDETAVYLTSGSPLPKDIDIILSSLLNDTFRDSNTKICNLCSTKGYALVDVLQLLT
LKLCTMTGLDSIPLGKLLDGMSQVECRLATNGTEEKIQTASLVGIFIETRQLMEM
NT seq 1068 nt   +upstreamnt  +downstreamnt
atgagacaaaaaattaatgatgacagtcaattaccatgggttgaaaagtatcgaccgcaa
cgacttgaagatttagttgcacatgaaaatattattaatattattacaaatttaattgat
aatgataatttaccacatttgcttttatatggaccacccggaactggtaaaacaagtaca
atagtcgcagcagcaaaacgtatgtatggagcatccaagtataattcaatgacattggaa
ttaaatgccagtgatgcacgtgggattaatgtggtacggaatgaaattaaagaatttgct
ggtacgaaacaattattctcgaaaggcatcaagttaattatactagatgaagcagatgcc
atgaccaatgatgcacaatttgcattacggcgtgtgattgaaaagtataccaagaatgct
agattttgtttaatttgtaactacgtgtccaaaattattcctgcattacaatcacgatgt
actcggttccgatttgcaccgttattaccggatcaaatccgtggtcgactggaggaggtc
gcgaaggaagaaaaggtaccattaacagaagatggtgtcgaagctatattagatttatct
tgtggtgatatgagacgtgtattgaatttattacaatccacagcaatgtcgaacttacca
tcaacatcaacatcaacatcaacggatatggaaatcgatggcgacgagaaaacaacaact
actactattcctgttgatgaaacagctgtttatttaacaagtggttcaccattaccaaaa
gatattgatatcatattatcatcattattgaatgatacattccgtgattcaaatacaaaa
atttgtaatttatgttccacgaaggggtatgcattagttgatgtactacaactattaact
ctaaagttatgtacaatgactggattagattcgataccacttggtaaattattagatgga
atgagtcaagttgaatgtagattagcaactaatggtacagaagaaaaaattcaaactgca
tcattagttggtatatttattgaaactagacaattaatggagatgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (61)   
   KEGG ORTHOLOGY (1)   
   RefGene (57)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (28)   
   Pfam (28)   
All databases (99)   

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