KEGG   Fimbriimonas ginsengisoli: OP10G_4608
Entry
OP10G_4608        CDS       T03038                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
fgi  Fimbriimonas ginsengisoli
Pathway
fgi03030  DNA replication
fgi03410  Base excision repair
fgi03420  Nucleotide excision repair
fgi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fgi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OP10G_4608
   03410 Base excision repair
    OP10G_4608
   03420 Nucleotide excision repair
    OP10G_4608
   03430 Mismatch repair
    OP10G_4608
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fgi03032]
    OP10G_4608
   03400 DNA repair and recombination proteins [BR:fgi03400]
    OP10G_4608
Enzymes [BR:fgi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     OP10G_4608
DNA replication proteins [BR:fgi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     OP10G_4608
DNA repair and recombination proteins [BR:fgi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     OP10G_4608
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     OP10G_4608
   MMR (mismatch excision repair)
    DNA ligase
     OP10G_4608
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      OP10G_4608
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH RNA_ligase RlmA_N BRCT_2 HHH_8
Other DBs
NCBI-ProteinID: AIE87976
UniProt: A0A068NX11
Position
complement(5003855..5005951)
AA seq 698 aa
MDPAARVAELRDEIEHHSHLYYVLDTPEISDSEYDRLFRELQDLEAAHPELASDDSPTLK
VGAPPVSAFKPHRHAVPMLSLDNAFGEEELRAFDDRIRRGLETDGHTEYFVELKFDGASI
SLTYVDGKLDVAATRGDGTTGEEITPNARTIRGVPLKLREALPGRIEVRGEVVMLRSDFE
KINEARAAAGEQVFANPRNAAAGGLRQLDSRLTAKRKLRFFAFGVGQVELLSGKAEGDLE
KPAPEEAETRHAVRQRGLIRRLAPTQSGTLERLKELGFPARTEVQVVRGFDELHAFVQAV
QAKRAELPFNIDGVVIKVNELDQQEALGFTSRGPRWATAYKFPAEQAFTKLNRIFVQVGR
TGTINPVADLEPVVVGGATVSRATLHNYDEVRRKDVREGDIVIVQRAGDVIPEVVGPVLE
KRVGDPPLPEEPTICPVCETPLQRREGEVALRCPNRHCPAQIAMKIQHFVGRRMMDIDGL
GEKLIDRFLELGLIKTIPDIYRLHNHRETLVNLERLGEQSVDNLLRSIENTKHRPLARFL
FALGIPEVGERGAQDLARELRTLDAVRSADYETLVALPNIGPRTAGEIVQWFDDEENRRL
VDELLELGVAPEEGAAPSSDLFEGKTFVFTGKLERITREEGEAAVISLGGKAAGSVSKNT
TYVVAGPGAGSKLAKAEQLKVEVLDEDGFLAMLPDGTL
NT seq 2097 nt   +upstreamnt  +downstreamnt
atggatccggctgcccgcgttgcggaacttcgcgatgagatcgagcatcattcgcacctg
tattacgtgctcgacacgcccgagataagtgactcggaatacgatcggctgtttcgcgag
ctgcaggatctggaggcggcgcatccggagctagcttccgacgacagcccaacccttaaa
gtcggggcgccgccggtctccgcgtttaagccgcaccggcacgcggtgccgatgttgtcc
ctcgataatgcgtttggcgaagaggagcttcgcgcgttcgacgatcgaattcggcgtggg
ttggagacggacgggcacaccgaatacttcgtcgagctcaaattcgacggcgcgtcgatc
tcgttgacctacgtcgacgggaagctcgacgtcgccgccaccagaggagacgggacgacc
ggagaggagatcacgccgaacgcccgtacgatccgcggggtgccgttgaagcttcgcgaa
gcgctgcccgggcgcatcgaggtgcgcggcgaggtcgtgatgcttcgatccgacttcgag
aagatcaacgaagcgcgcgcggcagcgggggaacaggttttcgccaacccccgcaatgcc
gccgcgggcggcttgcgtcagctcgatagccgactaacggcgaagcgcaaactgagattc
tttgcgtttggagtcgggcaggtggagctcttgtccggaaaagcagagggagacctcgag
aagccggctcccgaagaggcggagacgcgccacgcggtgcggcaacgcgggctcattcgt
cgattggcgccaacccaaagcggaaccttggagcggctgaaagagcttggctttcccgcc
cgtaccgaggtgcaagtggttcgcggtttcgatgagctgcacgcatttgtccaagccgtt
caggcaaagcgggcggagctgccatttaacatcgacggcgtcgtcatcaaggttaacgaa
ctcgaccagcaggaggcgctggggttcacgtcgcgaggccctcgctgggcgaccgcgtat
aagtttccggcggagcaggcatttaccaagctcaaccgaatctttgttcaggtggggcgg
acgggcacgatcaacccggtcgcagatctcgaaccggtggtcgtcggcggagccaccgtc
agccgggcgacgctccacaactatgacgaggtgcgccgaaaggatgtccgggagggggac
attgtcatcgttcaacgagcaggggacgtcatccccgaggtcgtggggccggtgctggaa
aagcgggtgggcgatccgccactgccggaagagccgaccatctgcccagtctgcgagacg
ccgctgcagcgaagggaaggagaggtggcgctccggtgcccgaaccgtcattgccccgcg
caaatcgcgatgaagatccagcacttcgtggggcgtcggatgatggacatcgacggattg
ggcgaaaagctgatcgaccgcttcctcgagctcgggctcatcaagacgatcccggatatc
taccgcctccataaccaccgcgaaacgttggtaaacctggagcggttaggcgagcaatcg
gtcgacaacctcctaaggagtatcgagaacacgaagcaccgtcctttggcgcgctttctg
ttcgccctgggtatcccagaagtcggggagcgcggtgcccaggatctcgcccgcgagctg
cggaccctcgacgcggtgcggtcggctgactacgaaactctcgtcgcccttccgaacatc
ggcccgaggaccgcgggggagatcgtgcagtggtttgacgacgaggagaatcgccgcctc
gtcgacgagctgctggagctgggggtggcgccggaagagggagccgcgcccagctccgac
ctcttcgaagggaagacctttgtcttcacgggcaagctagagaggatcacccgggaagag
ggggaggccgccgtcatcagcctgggagggaaggcggcggggagcgtgtcgaagaacacg
acctacgtcgtcgccggccccggcgcgggctcgaagctggcgaaggcggagcagctcaag
gtcgaggtcttagacgaggacggcttccttgcgatgctcccggacggaacgctgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (49)   

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