KEGG   Flavobacterium anhuiense: BB050_03719
Entry
BB050_03719       CDS       T04718                                 
Symbol
recQ_4
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
fjg  Flavobacterium anhuiense
Pathway
fjg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fjg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BB050_03719 (recQ_4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fjg03019]
    BB050_03719 (recQ_4)
   03400 DNA repair and recombination proteins [BR:fjg03400]
    BB050_03719 (recQ_4)
Enzymes [BR:fjg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BB050_03719 (recQ_4)
Messenger RNA biogenesis [BR:fjg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BB050_03719 (recQ_4)
DNA repair and recombination proteins [BR:fjg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BB050_03719 (recQ_4)
SSDB
Motif
Pfam: DEAD Helicase_C HTH_40 RQC HRDC RecQ_Zn_bind ResIII Helicase_Sgs1 GerE HEM4 DUF2802 zf-CXXC Toprim_3 HTH_5 Sigma70_r4_2 Cys_rich_CPXG
Other DBs
NCBI-ProteinID: AOC96801
Position
complement(4367837..4369957)
AA seq 706 aa
MPMTSEILHATLKENFGFEKFRPNQETIISTVLSGQDALAIMPTGGGKSICFQLPALILP
GITIVISPLIALMKDQVDSLKTNGISACYINSTQSSQEQQYYIDNLKSNNFKLVYVAPES
LSYLDMAFSELNISLIAIDEAHCISSWGHDFRPAYTNLGYLKSRFPSTPILALTATADKA
TRTDISKQLNLKNPKTFIASFDRKNLSLEVRPALDRVKQIIDFIENKPNESGIIYCLSRK
ATEELAEKLRKNGIEAKAYHAGLDNETRAKTQDQFINDDCQVVCATIAFGMGIDKSNVRW
VIHYNLPKNIEGYYQEIGRAGRDGLPAETVLFESYADVIQLQKFASEGLNFDIQLAKLDR
MKQYADAVSCRRKILLSYFGELVTENCGNCDICKNPPTFFDGTILAQKALSAIVRLKESE
PLAVIVDFLRGSRNAYIYEKNYQELKTYGIGADVSWYDWNQYLIQLINLGYCEIAFHQHN
KILLTPFAKKVLFEGEKVKLTTVVKKTIDKSEAKEAKPKASKNSLFETLRKLRYEIAQEE
EVPAYVIFSDASLRQMEILRPMSDEEFLAVEGVGKAKLEKYGADFIKAIIEFERNKSVVK
KEKKDNTYKKTLELFQNGVSVEEIAEQRDLNPTTIISHLAKLYVDGHDLDLSQFVSEDEI
LQIENAQTELENPNALRPYFDYFEEKMSYDKIRFGLAFLERRNQKI
NT seq 2121 nt   +upstreamnt  +downstreamnt
atgcctatgacttcagaaattctacacgctacattaaaagaaaactttggtttcgaaaaa
ttcagacccaatcaagaaactataattagtaccgtcttatctggacaagatgcattggca
attatgccaacaggcggaggaaaatcaatttgttttcagcttcctgctttaattttacca
ggaatcactattgtgatatcgccactaattgctttaatgaaggatcaggttgatagttta
aaaacaaacggaatttctgcttgttatattaatagtacacaatcatcgcaagaacagcaa
tattatatcgacaacttaaaatcaaataactttaagttagtttatgtcgcaccagaaagt
ctttcttatttagatatggcttttagcgaattgaatattagtctaatagcaattgatgaa
gcgcattgtatctcgtcttggggacatgatttcagaccggcttatactaatttaggatac
ctaaaaagtcggttcccttctactccaattttggcattgacagctacagctgataaagcg
actcgaacagatatatccaaacaattgaatcttaagaatccgaaaacattcatagcttct
tttgatcgtaaaaatctaagtcttgaagttcgtccagctttggatcgggtgaaacaaata
attgattttattgaaaacaagcctaacgaatcgggaattatttattgtttgagccgtaaa
gcaacagaagagcttgctgaaaaattacgaaaaaatggaattgaagcgaaagcatatcat
gctggtttagataatgaaacgcgagcaaaaactcaggatcaatttataaatgatgattgt
caggtggtttgcgcaacgattgcttttggaatgggaattgataaatcaaatgttcgctgg
gtaattcattacaatcttccaaaaaatatagaaggatattatcaggaaattgggcgtgcc
ggacgtgacggtcttcctgccgaaacggttttgtttgagagttatgcagatgtgattcaa
ttgcaaaaatttgcatcagaaggattgaactttgatattcagcttgcaaaattagaccgt
atgaaacaatacgcagatgctgtaagctgtcgtagaaaaattctactgtcttattttggc
gaattggttactgagaattgcggaaactgcgatatttgtaaaaatccgccaacttttttc
gatgggacgattctcgcgcaaaaagctttgtctgctattgtacgtttgaaagaatctgag
cctttggctgtaatagtggattttttgagaggctcgagaaacgcgtatatctacgaaaaa
aattatcaagagctaaaaacgtacggaattggcgctgatgtttcttggtacgattggaat
caatatcttattcaactgattaatttaggctattgcgaaattgcctttcatcagcataat
aaaattctacttactccttttgcaaagaaagttttatttgaaggcgaaaaagtaaaactg
acaacagttgttaagaaaacaattgataaaagcgaagctaaagaggcaaaaccaaaagcg
tctaaaaattctctgtttgagacacttcgaaaattacgttatgaaattgcgcaggaagaa
gaagttcctgcttatgtgatttttagtgatgcgtccctacgccaaatggaaatcttgcga
ccaatgagcgacgaagagtttcttgctgttgaaggtgttgggaaagcaaaactagaaaaa
tatggtgcagatttcatcaaagccattattgaatttgaaagaaataagtctgttgtcaaa
aaagagaaaaaagacaatacttataaaaaaacgctggaattatttcaaaatggagtttca
gtagaagaaatagcagaacagcgagatttgaatccaacaacaattatttcgcatttagca
aaattatacgttgatggccatgatttagatctaagtcagtttgtctctgaagatgaaatt
ctccaaatagaaaatgctcaaacagaattggaaaatccaaatgcattaagaccttacttc
gattattttgaagaaaaaatgtcttatgataaaattagatttggtttggcttttttggag
agaaggaatcaaaagatataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (16)   
   Pfam (16)   
All databases (26)   

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