KEGG   Fomitiporia mediterranea: FOMMEDRAFT_109397
Entry
FOMMEDRAFT_109397 CDS       T03132                                 
Name
(RefSeq) replication factor-a protein
  KO
K07466  replication factor A1
Organism
fme  Fomitiporia mediterranea
Pathway
fme03030  DNA replication
fme03420  Nucleotide excision repair
fme03430  Mismatch repair
fme03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FOMMEDRAFT_109397
   03420 Nucleotide excision repair
    FOMMEDRAFT_109397
   03430 Mismatch repair
    FOMMEDRAFT_109397
   03440 Homologous recombination
    FOMMEDRAFT_109397
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:fme03000]
    FOMMEDRAFT_109397
   03032 DNA replication proteins [BR:fme03032]
    FOMMEDRAFT_109397
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_109397
Transcription factors [BR:fme03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    FOMMEDRAFT_109397
DNA replication proteins [BR:fme03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    FOMMEDRAFT_109397
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     FOMMEDRAFT_109397
   MMR (mismatch excision repair)
     FOMMEDRAFT_109397
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     FOMMEDRAFT_109397
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF223 DUF5020 DUF5521 VD10_N tRNA_anti_2 HROB
Other DBs
NCBI-GeneID: 18670419
NCBI-ProteinID: XP_007267609
JGI: Fomme1_109397
Position
Unknown
AA seq 605 aa
MSDIQLTTGSIERLLSVAPGDNELWETGHVLQLLSLKKIGAAREGAAPDRFRLVVSDGVH
YTQAMLATQLTGMVDEGEIAKYSVVKVEKLTCNNVQNKKLLILLALTPVGNPGEKIGDPG
SLEVPGQNASSSTEAQATPTTAVNTPVAQQQKSVQSQKPPQQQQQQQRANGPVVFPIEGL
SPYQNKWTIRARVTVKSDVRHYSTPKGEGKIFTVTLMDDSGEIRATGFNHQVDQFYDKLE
EGKVYYVSKARVNLAKKKFSNVQNEYELMLGTETEISECADQAAAPQITYHFVKLSELGN
QEKDTTCDVIGIVKDVSDVTEIVAKATGRTIKKRELTLIDLSEFAVRMTLWGKQAESYTA
EEHAVLAFKGARVGDFGGRSLSMSNATHMSVNPDINEAHVLRGWFDSLNSPPAFKSHSGG
SSSAGGFGDIRREAMKTLLEVRALQENVPDGGENFSCRGTILHIKADNLFYPACPTCNKK
VIEGSEGWRCEKCDRAYTEPEYRFMMSMSVADHTGQVWLNGFNDVGLVVFGKTASELHEL
KERDESAYTAAIARATCNTYNFNCRAKQDTYNEQSRVRFGIQKIMPLDYKLEAGLLRDRL
KKMGL
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgtccgacatccagcttacaaccggctcaatagaaaggcttctctctgtcgcaccaggc
gacaatgagctctgggagactggccatgttcttcagctcctttcgctaaagaagattggt
gcggcgcgtgagggcgctgcgcctgaccgtttcagacttgtagtgtcggatggtgtccat
tacacgcaagccatgcttgcgacacagcttactggtatggtcgacgagggcgaaatcgcg
aagtactcggtcgtgaaagtcgaaaaactcacatgtaacaatgtgcaaaacaaaaagctc
cttatcctattagcgctcacgcctgtaggtaacccaggtgaaaaaattggtgatcccgga
tcactcgaagtccctggacagaacgcatcatcaagtacagaagcacaagcaacgcccacg
actgcagttaacacccctgttgcccaacagcaaaagtccgttcagtctcagaaacctccg
cagcagcagcagcagcagcagcgagcaaatggccctgtggtttttcctattgaagggcta
agtccatatcaaaacaaatggacaattcgtgctcgtgttacggtcaaatccgacgttcgg
cattattctactccaaagggtgagggcaagatatttactgtgactctcatggacgactcg
ggcgaaattcgggcaaccggcttcaatcaccaggtggatcagttctacgataagctcgag
gaggggaaggtctactatgtttccaaggcccgtgtaaaccttgccaagaaaaagttctcg
aacgtacagaatgaatatgagcttatgcttggcacagaaacggaaatttctgagtgtgcg
gatcaagcagctgctccacaaatcacgtaccactttgttaagttgtctgaacttgggaat
caagaaaaggatacgacttgcgatgtaatcggcattgtgaaagatgtgtctgatgtaaca
gagatagttgcaaaggcaactgggaggacgatcaaaaagcgagaactgactcttattgac
ctgtcggagttcgcggtccgtatgacactctgggggaagcaggcagaaagctatactgct
gaggagcacgctgtccttgcattcaagggcgctagggttggtgattttggagggcgttca
ctatccatgtcaaatgctacccacatgtccgtcaatcctgatattaatgaagcgcacgtt
ctccgtggatggtttgattcactgaactcgcccccagcattcaagtctcactctggtgga
agctcctctgcaggtggattcggtgacatcaggagggaggcgatgaaaactctcttagaa
gtcagggctttgcaggaaaacgtacctgacggcggtgagaatttttcgtgcaggggaacg
attctgcacatcaaagcggacaatctattctatccggcatgcccgacgtgtaacaaaaaa
gttattgaagggagcgagggatggcggtgtgagaaatgcgaccgtgcatatacggagccc
gagtatcggtttatgatgtcgatgtcggtggcggaccacacagggcaagtgtggttgaat
ggcttcaatgacgttggtcttgtcgtgttcggcaagacggcgagcgagctccatgagttg
aaggagcgagacgaaagtgcatatactgcggcaattgcgagggcgacgtgcaatacatat
aacttcaactgccgtgcaaagcaagacacgtataacgagcaatcgcgggtgcggtttggg
atccagaagatcatgcccttagattacaagctggaagcgggattactccgtgaccggctg
aagaagatgggcctctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (70)   

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