KEGG   Fomitiporia mediterranea: FOMMEDRAFT_124946
Entry
FOMMEDRAFT_124946 CDS       T03132                                 
Name
(RefSeq) ras-domain-containing protein
  KO
K07936  GTP-binding nuclear protein Ran
Organism
fme  Fomitiporia mediterranea
Pathway
fme03008  Ribosome biogenesis in eukaryotes
fme03013  Nucleocytoplasmic transport
fme03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    FOMMEDRAFT_124946
   03008 Ribosome biogenesis in eukaryotes
    FOMMEDRAFT_124946
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    FOMMEDRAFT_124946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_124946
   03009 Ribosome biogenesis [BR:fme03009]
    FOMMEDRAFT_124946
   03016 Transfer RNA biogenesis [BR:fme03016]
    FOMMEDRAFT_124946
   03036 Chromosome and associated proteins [BR:fme03036]
    FOMMEDRAFT_124946
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:fme04147]
    FOMMEDRAFT_124946
   04031 GTP-binding proteins [BR:fme04031]
    FOMMEDRAFT_124946
Messenger RNA biogenesis [BR:fme03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     FOMMEDRAFT_124946
Ribosome biogenesis [BR:fme03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    FOMMEDRAFT_124946
  Pre-60S particles
    FOMMEDRAFT_124946
Transfer RNA biogenesis [BR:fme03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    FOMMEDRAFT_124946
Chromosome and associated proteins [BR:fme03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     FOMMEDRAFT_124946
   Spindle formation proteins
    FOMMEDRAFT_124946
Exosome [BR:fme04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   FOMMEDRAFT_124946
GTP-binding proteins [BR:fme04031]
 Small (monomeric) G-proteins
  Ran Family
   Ran
    FOMMEDRAFT_124946
SSDB
Motif
Pfam: Ras Roc Arf G-alpha Gtr1_RagA MMR_HSR1 GTP_EFTU Pox_A32 AAA_7 RNA_helicase AAA_16 TsaE AAA_24 DUF5906 AAA_33 AAA_22
Other DBs
NCBI-GeneID: 18671339
NCBI-ProteinID: XP_007267873
JGI: Fomme1_124946
Position
Unknown
AA seq 219 aa
MEAQQSQQQTIPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLTFTTNFG
TICFNVWDTAGQEKFGGLRDGYYIQGQCGIIMFDVTSRITYKNVPNWYRDLERVCENIPI
VLCGNKVDVKERKVKTAAVTFHRKKNLQYFEISAKSNYNFEKPFLWLARKVVGNNTLEFV
AAPALEPAQVVIDQELMKKYEQELAAAEAVPLPEEDDDL
NT seq 660 nt   +upstreamnt  +downstreamnt
atggaggcccaacagtcacaacagcagacaattcctacattcaaactcgttcttgtcggc
gatggtggtactggcaaaacgacgttcgtcaagcgccatttgacgggcgagttcgaaaag
aaatatattgcgactctcggtgtggaggttcaccctttaaccttcaccaccaacttcggc
accatctgcttcaacgtatgggacaccgcagggcaagaaaagtttggtggtttgcgcgat
ggttattatatccagggccaatgcgggatcattatgttcgacgtcacttcacgcattaca
tacaagaacgtcccgaactggtaccgcgatctcgaacgtgtctgcgaaaacatcccgatc
gtgctttgcggtaacaaagtcgacgttaaagaacgaaaagtcaaaaccgccgctgtgacc
ttccacaggaagaagaacctccaatacttcgagatctctgcgaagtcaaattacaatttc
gaaaagccgttcctctggttggcaaggaaggtcgtaggcaacaacacgctggaattcgtc
gctgcaccagctcttgaaccggctcaggtcgtcatcgaccaagagctcatgaagaagtat
gagcaggagcttgctgcggccgaggccgttcctcttcccgaagaagacgacgacctgtaa

  All links  
Ontology (7)   
   KEGG BRITE (7)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (51)   

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