KEGG   Fomitiporia mediterranea: FOMMEDRAFT_131906
Entry
FOMMEDRAFT_131906 CDS       T03132                                 
Name
(RefSeq) DNA mismatch repair protein MSH2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
fme  Fomitiporia mediterranea
Pathway
fme03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    FOMMEDRAFT_131906
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_131906
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     FOMMEDRAFT_131906
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_II MutS_I
Other DBs
NCBI-GeneID: 18671742
NCBI-ProteinID: XP_007263499
JGI: Fomme1_131906
Position
Unknown
AA seq 962 aa
MALMYGKEKNEDHDFDQADISFISFFSKLPPKRADTIRLFDRRDFFSAHGEDATYIAMQV
FRTQSVLKYLGSGGKASGLPSVTLSNNVATAFLRDALTSLQLRIEIWVSEGGKKGAKFRL
EKEASPGNLQAVEDLLFVNTDMLSAPIVMAVKIGTSTLGAAGSSGIKTKAVGVAFADTSV
REIGISEFVDSDLFSNIESLVIQLSVKEAVIPMSSKTGNTDRDLELNKLKGVFERCGVVI
TERKPSDFAAKNIEQDLALLVKTNTGVDITASIPELSSSTSAAASATSALISYLSLLGDA
SNHNAYVLKTHDLSQFMKLDASALRALGLAGDSTTSAKNTTLHGLLNKCKTGQGTRLLGS
WLKQPLVNLHEIQKRQDLVQTFIHDSNTRRTLQDDYLRMMPDMHRISKRFQRSVATLEDV
VRVYQAAQKLVGLIEALETVETEDVGHNKLIEEIYLIKLKEHSQNLEKYSEMVEQTLDLD
ELSSHNFVIKPDYDDRLRELADKLIEIRDGLDAEHRKVGRDLGLELDKKLHLENSQNYGY
CFRITKSDAKVIHNEKDYIELGTNKSGVYFTTKKLRSLAMDFQEITDTYSRTQSSLVKEV
VNIAATYTPVLEALDDQIAHLDVIVSFAHVSANAPEEYVRPKLSVKGSGSVVLKNARHPL
LEVQDDISFIPNDVEMIKGESEFQIITGPNMGGKSTYIRQVGVIALMAQTGCFVPCSEAE
LPIFDSILCRVGAGDSQLKGVSTFMAEMLETATILKSASQDSLIIIDELGRGTSTYDGFG
LAWAISEYIASEIHAFCLFATHFHELTALDQQIPHVKNLHVVAHVSKTGESSQDRDITLL
YKVEPGICDQSFGIHVAELANFPESVVKLAKRKADELEDFGGEHEKQPTHPKEIVDEGSK
IVEQLLQEWTARCASAETGDGDVIMDEDEKAEKDLVALQNCVAKYQGQIDANPWIQQLIA
TL
NT seq 2889 nt   +upstreamnt  +downstreamnt
atggcgctcatgtatgggaaggagaaaaatgaagatcatgatttcgaccaagccgatatc
agcttcatctcgttcttcagcaagctccctccaaagcgcgcagacacaatacgcttgttc
gacaggcgagacttcttttctgctcatggcgaagatgcaacatatattgctatgcaagtc
tttcgcactcaatcggtactcaaatatctcggttccggaggcaaagctagcggattgcct
agtgttacgctcagtaacaacgtagctactgcattcctacgtgatgcactcacgtcactg
caacttcgaattgagatctgggtgtcggaaggaggaaagaaaggtgcaaagtttagactt
gaaaaagaggcttcccctgggaaccttcaagctgtggaggaccttctgtttgtcaataca
gacatgctctcagcgcctatagtcatggcagtgaaaattggcacatcgacacttggtgca
gccgggtcatcgggcataaagacaaaagcagtcggggtagccttcgccgatacgtccgta
cgtgaaatcgggatctcagaatttgttgacagcgacctcttctcaaatatcgagtccctt
gtaatacaactgtccgtgaaagaagctgtaatcccgatgtcttcgaaaacaggaaatacg
gatcgtgatttagagttgaacaagctgaagggcgtctttgaacgttgtggagtcgttata
acggaacgcaagccgagtgacttcgctgcgaagaatatcgaacaagaccttgctcttcta
gtcaaaacgaacacgggcgtggacatcactgccagtatacccgagctttcctcttccacg
tctgctgccgcttctgctaccagtgctctgatttcatacctctctctactcggagacgca
tccaatcacaatgcatacgttctcaaaacgcatgatttatcccaatttatgaagctggat
gcgagtgctcttcgcgcccttggactggcaggagacagtacaacgtctgcaaagaatact
actcttcatggacttctgaataaatgcaaaacaggtcaagggactcgtctcttgggaagc
tggctgaagcaaccattggtgaacttacatgaaatccagaagcgacaggacctagtccaa
acattcattcacgactccaacactcggcggacgctacaggatgactacctaagaatgatg
cctgacatgcatcgaatcagcaagcgattccagaggtctgtagcaactttagaagacgtt
gtccgtgtctatcaggcagcacaaaagctcgtgggcttgatagaagcactagaaactgtg
gaaacagaggacgttgggcataacaaactcatcgaagagatctatcttatcaagttaaag
gagcacagccagaatctcgaaaagtactcggaaatggttgaacagacgcttgacctcgac
gaactttcttcgcacaactttgtcataaagccagattatgatgatcgcttacgagaattg
gccgacaagctcattgaaattagggatggacttgatgctgagcatcggaaggttggacgc
gatcttggtttggagcttgacaagaagctacaccttgagaacagccagaactatggttat
tgtttccgaattacaaagtctgacgcaaaggtgatacataatgagaaggactatattgaa
ctagggacgaataagagtggtgtttactttaccacgaagaagttgcggtccttggctatg
gatttccaagagataacggatacatattcacggactcaaagtagtttagtgaaagaagtt
gtcaatattgctgcaacgtacacgccggtcttagaagcccttgatgaccaaatcgctcac
cttgatgtcatcgtaagctttgctcacgtttctgcgaacgcaccagaggaatatgttaga
cctaaactttcagtgaagggatctggaagcgttgttctgaagaacgcaaggcatccactt
cttgaggtacaagacgacatcagtttcatacccaacgatgttgaaatgatcaaaggggag
agcgagtttcaaatcataactggcccaaacatgggcgggaaaagcacatatattcgtcaa
gtcggagttattgccttaatggctcagacgggttgcttcgtaccatgctctgaagccgaa
cttcctattttcgactcaattttgtgccgagtcggagcaggagacagtcaacttaagggt
gtctcaacgttcatggctgaaatgctggagacggctacaatcttgaagtcagcatcgcag
gattcacttatcatcattgatgaattaggccgaggtacatcaacatacgacgggttcggc
ctcgcatgggcgatttctgaatacatcgcatcagaaatccacgcattctgtctcttcgcc
acgcattttcacgagttgacagcactcgaccaacaaatcccacacgtcaagaatctacat
gtcgttgcacacgtctcgaagaccggggaatcatcacaggatcgtgacatcaccctactc
tataaagtcgaaccaggcatttgtgatcagagcttcggtatccacgtcgccgagctagct
aatttcccagagagtgtcgtcaaactggccaagcgaaaagccgacgaactagaagacttt
ggcggcgaacacgaaaagcaacccacacatccaaaagaaatagtagacgaaggaagcaag
atagtcgaacagctcctccaagaatggacagcacgctgtgcgtctgctgagacaggcgac
ggagacgtgattatggatgaagacgagaaagccgagaaggacttggtagcacttcagaat
tgtgttgcaaagtaccaaggacagatagatgccaatccctggattcaacaacttatcgca
actctctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (56)   

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