KEGG   Fomitiporia mediterranea: FOMMEDRAFT_137752
Entry
FOMMEDRAFT_137752 CDS       T03132                                 
Name
(RefSeq) ATP-dependent RNA helicase ded-1
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
fme  Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:fme00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_137752
   03041 Spliceosome [BR:fme03041]
    FOMMEDRAFT_137752
   03036 Chromosome and associated proteins [BR:fme03036]
    FOMMEDRAFT_137752
Enzymes [BR:fme01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     FOMMEDRAFT_137752
Messenger RNA biogenesis [BR:fme03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     FOMMEDRAFT_137752
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     FOMMEDRAFT_137752
Spliceosome [BR:fme03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    FOMMEDRAFT_137752
Chromosome and associated proteins [BR:fme03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    FOMMEDRAFT_137752
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 18672159
NCBI-ProteinID: XP_007261385
JGI: Fomme1_137752
Position
Unknown
AA seq 628 aa
MSNGIVNGTDGLESRFASLGINGTRSAYVPPHMRKAQQAAPSPPPSNTGNGWNAPNNAPP
YQPRGNYSGGLGGGRNNYSQGYGGRGGWDSPRDNSGGRGGREDGRWVDGKHIPGPRNLRI
EKELFGDAEDPSKQHTGINFEKYDDIPVEATGAGVPEPITEFTNPPLDPVLLENIAFAHY
TTPTPVQKYSIPIVAANRDLMACAQTGSGKTGGFLFPILSASFVEGPRAPPLDMGGAYGR
RKAFPTTLILAPTRELVSQIHDEARKFAYRSWVRTAVVYGGADIGAQLKQIDRGCDLLAA
TPGRLVDLIERGRISLANIRYLVLDEADRMLDMGFEPQIRRIVQGEDMPDVHNRQTLMFS
ATFPRDIQILAKDFLKDYVFLSVGRVGSTSENITQKIEYVEDPDKRSVLLDILASQPSGL
TLIFVETKKMADMLSDFLMVNQIPATSIHGDRSQREREMALATFRQGRTPVLVATAVAAR
GLDIPHVMHVINYDLPSDIDDYVHRIGRTGRAGNTGIATAFFNRGNRNIVRDLVELLREA
NQEVPSWLDAVARESSFGGGAYRGRGGGGRGRGRGGTRDYRTGGGGGGGYGGGGFGGPRM
NGSGGMGGGYGGPQYGGGGYGGGQGSWW
NT seq 1887 nt   +upstreamnt  +downstreamnt
atgtcaaatggaattgtaaacggtaccgacggtctcgagagtcgctttgcgtctctcggc
atcaatggcactcgatctgcttatgtccctcctcatatgaggaaagcgcagcaggctgct
ccctcgccccctccgagcaatactgggaacggctggaacgctccgaacaacgcccctcct
tatcaaccgcgtggcaactacagcggcggcttaggtggcggaagaaacaactatagccaa
ggctatggcggtcgcggaggctgggactctcccagagataacagcggcggtagaggtggc
agagaagacggccgctgggttgatgggaaacatattcctggtccccgaaacctccgcatc
gagaaggagctctttggtgatgccgaagatccctccaagcagcacaccggaatcaacttc
gagaagtacgacgacattcccgttgaggcgacgggcgctggcgtccccgaacccattacg
gagtttacgaacccacctctggatcccgtcctcttagaaaacatcgcgttcgctcattac
acgacgccgactcccgttcaaaagtattctatcccaattgttgctgctaacagggacttg
atggcgtgtgctcagactggctccggaaaaactggtggattcctgtttcccatcctttct
gcatcatttgttgaaggccctcgtgcgcctcctcttgatatgggcggtgcgtacggacgc
cgcaaggcttttcctaccacgcttattctggcaccaactcgcgagttggtcagtcagatc
catgacgaagcccgcaaatttgcctaccgctcttgggtccgtactgctgtcgtctacggt
ggtgctgatattggggctcagttgaagcaaattgatcgtgggtgtgacctcctggctgcc
acgccgggacgtctcgttgatctgattgaacgtgggcgcatcagccttgcgaatattcgc
tatcttgtccttgacgaggcggatcgtatgcttgacatgggttttgaacctcagatccgt
cgtatcgttcagggtgaagatatgcctgatgttcataatcgtcaaacgcttatgttcagc
gccacgttcccgcgcgacatccaaatcctagccaaggacttcctcaaggactacgttttc
ctttctgttggtcgtgttggctctacctcggagaatatcacgcagaaaatagaatatgtt
gaagatccggataaacgctccgtccttctggacatcctcgcgtctcagccaagcggactt
accttaattttcgtggaaacgaagaaaatggcggacatgctttctgacttcctaatggta
aaccaaatccctgcaacatctattcacggcgaccgcagccagcgcgaacgtgaaatggca
cttgcgacattccgtcaaggacgcactccggttttagtcgccactgctgttgctgcccgc
ggactcgatattccgcatgtcatgcacgttataaattacgacttgccttctgacattgat
gattacgtgcaccgtattggtcgtactggtcgtgccggaaacaccggtattgcgactgcg
ttcttcaaccgtggaaaccgcaacattgttcgcgaccttgttgagctgcttcgtgaagca
aaccaggaggttccgagctggctcgacgccgtcgcccgtgagtcctcgtttggtggcgga
gcataccgcggacgcggcggtggaggccgtggtagaggccgtgggggtactcgtgactac
cgtactggaggcggaggcggaggcggctatggtggcggaggcttcggcggtcctcgcatg
aatggcagtggtggtatgggcggcggatatggtggtccccagtacggcggaggaggatac
ggcggcggccaaggaagctggtggtaa

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Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (57)   

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