KEGG   Fomitiporia mediterranea: FOMMEDRAFT_140693
Entry
FOMMEDRAFT_140693 CDS       T03132                                 
Name
(RefSeq) hypothetical protein
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
fme  Fomitiporia mediterranea
Pathway
fme03022  Basal transcription factors
fme03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    FOMMEDRAFT_140693
  09124 Replication and repair
   03420 Nucleotide excision repair
    FOMMEDRAFT_140693
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fme03021]
    FOMMEDRAFT_140693
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_140693
Transcription machinery [BR:fme03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     FOMMEDRAFT_140693
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     FOMMEDRAFT_140693
SSDB
Motif
Pfam: BSD PH_TFIIH GvpG
Other DBs
NCBI-GeneID: 18672529
NCBI-ProteinID: XP_007266576
JGI: Fomme1_140693
Position
Unknown
AA seq 590 aa
MPTTTTYLVRAKAAYKKTPGLLELTPTHLQWTASGKQAPDLRISNGKAASLFCSKEGSAQ
VKLKLGLVGDDAGHTFLFTSSQATAERESFKKELQTIIWNNRASSAATPADSTISGSVTP
LQQALPGRVAMSTAPSVSRATSVSSTGRASSSGPGGPAEDFRLRKKVLLKNAELASLHRE
LVMSGQITETEFWEGREQLLLAEASQETQKRGRPGQLVDPRPETVAGGDIKIVITPQLVH
DIFEEYPVVAKAYNETVPRQLSEAEFWKRYFQSKLFNRHRASIRSSAAQHVVKDDPIFDK
YVEEEDDGLEPRRQRDNDVEMLVNLLATQEDHSETGNQKDTTMQAGKTRAALPLIRKFNE
HSERLLNAAEGSPTKRRRIDEANESLYAQIDLDDLHDSQSADGIILEMKDRDRYFDGRAT
GNSMDVDGEGRPPYKATLSETRNQMDNWNVGLASLRIDKKAGDAALQTMTQNVLARLDVK
MQKNDIPEGLFSQMRTCQTAANEFLRQFWSAAFPSPADGSTLGMASPAQRAAKSAKMAGY
LAKTPEKIDAIIATARNSGVDAAKIEVAMKPVLTAVEKALQFHQTRKTPR
NT seq 1773 nt   +upstreamnt  +downstreamnt
atgcctactacgacgacctatttggttcgcgcaaaggctgcctacaaaaagactcctggt
ctgcttgaactcactccgacacacctccaatggactgcatctggaaagcaggcgccagac
cttcgtatatcgaatggaaaagcagcctccctcttctgcagcaaggaaggttcggcacaa
gtgaagctcaagctaggattagtcggtgacgatgcaggacataccttcttgttcacgtcc
tcgcaggcgactgctgagcgggagtccttcaaaaaggagctccagaccatcatttggaac
aatcgtgcttcatctgccgcaacgcccgctgactcaacaatatctggctctgtaactccg
ttacaacaggccctgccaggtcgagtggctatgagtaccgctccatcagtttcacgcgcg
acttctgtttccagtacaggacgtgcctcctcgtctggccctggtggtcctgcggaagac
ttccgattacgaaagaaagtgctcttgaagaacgctgaacttgcctctttgcaccgcgag
cttgtaatgtccggccaaattacggaaactgagttctgggaaggtcgcgaacaactttta
cttgcagaagcctcgcaggaaactcagaagagaggaagaccgggtcagctcgtcgaccct
cgcccagagactgttgccggaggggatatcaagatcgtcatcacgccgcagctcgtccac
gatatctttgaagaatatcctgtcgttgccaaggcttataacgagaccgttccacgacag
ctttctgaagccgagttttggaagcgatatttccaatcaaaactcttcaatagacaccgg
gcgtctatccgttcgtctgctgctcagcacgtcgtaaaggatgacccaatatttgataaa
tacgttgaggaagaagacgacggtttggaacctcgccgtcaacgtgacaatgatgtggag
atgcttgtcaacctgcttgctacacaagaagatcactcagagacaggcaaccaaaaagat
actacaatgcaagcaggaaagacgcgggcggctttgcctcttatccgaaagttcaatgaa
cattcggagaggctcttgaatgctgcagaaggcagtccgacgaagagacgaagaatagac
gaagcaaacgagtcgttatatgcacaaatagacttagacgatttacacgactcgcaatcc
gccgatggaattatcctggagatgaaagatcgagaccggtacttcgacggtcgagcaaca
ggcaactcaatggatgttgatggtgaaggccgaccaccctacaaggcaacgctttcggag
acacgtaatcagatggataattggaatgtcggcctggctagtctgaggattgacaagaag
gccggggatgcagcactgcagaccatgactcagaatgtactggcacggcttgacgttaag
atgcagaaaaatgacattccggagggacttttctcacagatgcgcacatgccaaacggca
gcaaacgagttcctccgtcaattctggtcggccgcgtttccgtctccggcagatggaagc
acgcttggaatggcttcgcctgctcagagagcggcaaagtccgcgaagatggcgggatat
ctcgccaagactccagagaaaatagacgcaatcatcgcgacggcacgtaactcaggtgtt
gacgcagcaaagatcgaagtggcgatgaaacccgtgttgactgcagttgagaaagcatta
cagttccatcagactcgcaagacacctcgttaa

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