KEGG   Fomitiporia mediterranea: FOMMEDRAFT_74388
Entry
FOMMEDRAFT_74388  CDS       T03132                                 
Name
(RefSeq) pseudouridine synthase
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
fme  Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:fme00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:fme03016]
    FOMMEDRAFT_74388
Enzymes [BR:fme01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     FOMMEDRAFT_74388
Transfer RNA biogenesis [BR:fme03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    FOMMEDRAFT_74388
 Prokaryotic type
    FOMMEDRAFT_74388
SSDB
Motif
Pfam: PseudoU_synth_1 DUF2344
Other DBs
NCBI-GeneID: 18679641
NCBI-ProteinID: XP_007261235
JGI: Fomme1_74388
Position
Unknown
AA seq 502 aa
MSDQQGHVHKEERKKKGEKRDWSSRRRGTRQEREQPINDEEVDGDDKDRTSTPRLPKRLC
ALLIGFCGSGYKGMQIQPSEKTIEGVLFKALVNAGAVSKDNADDPVKVGLQRAARTDAGV
HAAGNVVSMKIITHVPGIPDLVQRINEELPPEIRLWSFQRVQNSFNARIRRYTYFFPSYL
LIPPKPTSAFYQSFIRQSSSTSSPSASSSTIQVDPFWENAPPEVTREEEMVRKKSWRVGK
EKIEALREAAKHFEGTHNFHNFTVGRDTKDRSCFRHMKKIEVADPVVYGETEWISVMLHG
QSFMLHQVGGLQRKMMCVLVMSVRTGTPSNIINALFGPLNVVIPKMPSLGLLLENPIFES
YSKRVETVNSQKKFDVEHTDYRAPIDFDKHAEEMQKFKEEHIYSRMRENEEKLQVFDRWQ
SIFDHYNGNDLLYYNTQGIIPSAAVVKKGESRPNPFRERKRFDATDFAPDAPATVLAEED
AEEEEAEREEKMNKKELEEAEG
NT seq 1509 nt   +upstreamnt  +downstreamnt
atgtcggatcagcagggacatgttcataaggaagaaaggaagaaaaaaggagagaagagg
gattggtcgagtcggaggagagggacacgacaagaacgtgaacaacctataaacgacgag
gaagtagatggagatgataaagataggacttcgacaccgagattaccgaaacggctatgt
gcattgctcattgggttttgtggatctgggtataagggtatgcagatccaacctagtgag
aagacgattgaaggtgtgcttttcaaggcacttgtgaatgctggtgcggtgtcgaaggat
aatgcggacgatcctgtcaaggtaggcctgcaacgcgccgcacgcacagatgcaggtgtg
catgctgcagggaacgttgtctctatgaagattattacgcacgtacctggaattcctgac
cttgtgcagaggatcaacgaggagctaccgcctgagattcgattatggtcttttcaacga
gtgcagaattcgttcaacgcgcgaattcgtagatacacctacttcttcccttcctacctc
ctcatccctcccaagcctacgagcgcattctaccaatctttcattcgccaatcttcctcc
acctcgtccccttctgcctctagctctaccatccaagtcgatccattctgggaaaacgcc
ccacccgaagtgacacgagaagaagaaatggtacgcaaaaagtcgtggagagtgggcaag
gagaagatcgaagcgttgagggaagctgcgaagcactttgaagggacgcataattttcat
aactttaccgtagggagggatacgaaggataggagttgttttaggcatatgaagaagatc
gaggttgcagaccctgtcgtttatggcgagactgagtggattagtgttatgcttcacgga
caaagcttcatgctacatcaggtaggcggactccagcgaaaaatgatgtgtgtcctcgtc
atgtcagtccgaacagggacacccagtaatattatcaatgctcttttcggtccactaaac
gtcgtcatccccaaaatgccctccctcggactcttgctcgaaaatccaatcttcgagtcg
tacagcaaacgcgtagaaaccgtaaactcacagaaaaagtttgacgtggaacacacagac
taccgcgctccgattgatttcgataaacacgcggaggagatgcagaagttcaaggaagag
catatatactctcggatgcgagagaatgaggagaaattgcaggtgtttgaccgatggcaa
agcatcttcgatcattacaacggaaacgacctcctttattataatacacaagggatcatt
cccagcgcagccgtcgtcaaaaagggcgagagtcgtccaaatccgttcagagagcggaaa
cgttttgacgcaacagattttgcacctgatgcacctgcgactgtgcttgctgaagaggac
gctgaggaagaagaagcggagagagaagagaagatgaataagaaggagttggaagaagca
gaaggataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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