KEGG   Francisella orientalis Toba 04: OOM_1061
Entry
OOM_1061          CDS       T02112                                 
Name
(GenBank) DNA-directed DNA polymerase
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
fna  Francisella orientalis Toba 04
Pathway
fna03030  DNA replication
fna03430  Mismatch repair
fna03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:fna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OOM_1061
   03430 Mismatch repair
    OOM_1061
   03440 Homologous recombination
    OOM_1061
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fna03032]
    OOM_1061
   03400 DNA repair and recombination proteins [BR:fna03400]
    OOM_1061
Enzymes [BR:fna01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     OOM_1061
DNA replication proteins [BR:fna03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     OOM_1061
DNA repair and recombination proteins [BR:fna03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     OOM_1061
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon Glyco_hydro_65m fn3_2
Other DBs
NCBI-ProteinID: AFJ43508
Position
1054857..1058336
AA seq 1159 aa
MFSHLRVHTGYSVVDSTVRLGDLFARAKDKSIVAVALTDVCNLFAAVKFYKQALSNGIKP
IFGVELKIDTEFGVCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLIPKDWLKDINL
ANIICLNGGQNGELGKAVLAKDNIKAEEIISENIAIFGRDSYIIEIHKLEYENEGLYNEK
ALEFASEHNLIAVATNLTVFLESDDYDIHEIRACINEKTTILDESRKSKFTREQYLKSAD
EMYQTFSELPVLLENTLAIAKRCNVTFYLGKPCLPTVDIPDGLTEREYFSKLCYQGLDKR
LAKIIENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDFIRWSKENDIPVGPG
RGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFCIQGRDRVIKYVEQK
YGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPEMPGTTFKKILHEGEPL
YDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISDFAPVYCEDKGGDIVTQF
DKGDVEDVGLVKFDFLGLKNLTIIKNTIASINAKRPTNQSSLDISDIPLDDEKTFKLLQA
GKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPIENIPTFVDRKHGRKQTIYL
HPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGKKKPEEMEQQRKIFKE
GAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAWLKAHYPDEYMAALMS
GDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAALKGTILLGLGAIKGLGGEAIKS
ILNEREAGGKCSSIFDLTRRVDLRKVNKKALEALCCAGAIKDISKNRATAFNSIEKAIKN
AGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLRELLINEKKALGMYFSGHII
DGESHWRNHVSFSDLEKIQKPSMDGNSVRIIASMITPPARRKTKTGRILYIINIDDEFDR
ADCLIGEDVFAAVKDNIQVDDVVVVEGKVSRDNQRECNKLSVDKVQPISQYIDENFSKVE
LNLRSQNVNSTNLKKVLDNLKKNIATTDIQRENVLEIKVSLDDVDAKFEYFRKPFSVYEF
VNDISRLIAEGSTVSLSGV
NT seq 3480 nt   +upstreamnt  +downstreamnt
atgttttctcatcttcgtgtccatacaggatattctgttgttgatagtacagttcgttta
ggagatctttttgctcgagcaaaagataaaagtattgtcgcagtagcattaaccgatgtg
tgtaatttatttgctgcggttaaattttataagcaagctttatcaaatgggattaagcct
atctttggcgtagagctaaagattgatacagaatttggcgtatgtgatttagtactatta
gcagaaaataatcaaggttatcaaaatatagttaatctagtttcaaaagcatatcaagag
gctgataggtttggttcaataccattaatccccaaagactggctaaaagatataaatttg
gcaaatatcatctgtctaaatggtggtcagaatggtgagctaggcaaagctgttttagct
aaagataatatcaaggctgaagaaattattagtgaaaatatcgcaatttttggtagagat
agttatattattgaaattcacaaacttgagtatgaaaatgagggcttatacaacgagaaa
gcactcgaatttgcaagtgagcataatctcatagcagtagcgacaaacttgacggtattt
ttggagtcagatgattatgatattcatgaaatcagagcttgtatcaatgaaaaaacaacg
atccttgatgagtcgcgcaaatctaaatttacaagagagcagtatctaaaatcagctgat
gagatgtatcaaactttctcagagctaccagtgttgttagagaatactttagcaatagca
aaaaggtgtaatgtaacattttatctaggtaaaccatgtttgccaactgttgatattcca
gatggtttgacggagagagagtacttttcaaagctatgctatcaaggtttagataaacgt
ttagcaaaaattatagaaaacagaccagttgataaacatgagcatattataaaagtttac
aaagatagactgcaacgcgagatcgatattatctgtgatatgggatttcctggttatttc
ttgatagttgaagatttcattagatggtcaaaagagaatgatatcccagtaggtccaggg
cgtggttctggtgctggttcattagtagcttattcactgcttattactgatattgatcct
ttaccgtatgggttgctttttgagagatttctaaatcctgaaagggtatcgatgccagat
tttgatattgatttctgtattcaaggtcgagatagagttatcaaatatgtagagcagaaa
tatggtaaacaaagcgttgggcaaattattacttacggtactatggctgccaaaggtgtg
gtacgagatgtagtgcgtgtaatgggacagagttttggttttggagataggattgctaag
ctaataccagaaatgccgggtactacatttaagaagattcttcatgaaggtgagcctcta
tacgatgaaatgcaggcagatgaagaagttgctgagattgttgaaaaagctcaaaaatta
gaaggtctaccacgaagtttaggtaagcatgcggcgggtattgtgatatccccgactgtg
atatcagattttgctcctgtatattgtgaagataaaggtggagatatagttacccaattt
gataagggcgatgttgaagatgttggtcttgtgaagtttgacttcttgggattgaaaaac
ttaacaatcatcaaaaatactattgcaagtatcaatgctaaaagaccaactaatcaatca
tctctagatatctctgatattcctcttgatgatgaaaagacatttaaactactacaggct
ggtaaaactatcggtatattccagctagagtcacaagggatgcaacagattgtcaaagat
cttggcacttcaaattttgaggagattatcgccctagtagccctatatcgtcctggtccg
atagagaatattccaacattcgtagatcgtaaacatggtagaaagcaaactatctattta
catccattactagaagaagtgcttagagaaacttatggtataccagtttatcaagagcag
gtaatgcaaatggcgcagaagctagctggttatactttaggtggagcagatttattgcgt
cgcgcaatgggtaagaaaaagccagaagagatggagcaacagcgtaaaatttttaaagaa
ggtgctgctaaatatcacaatattgaagctggcctcgctgatgagatatttgaccaaatg
gaagcctttgctggttatggtttcaacaaatctcatgctgcggcttatgcgttgattgca
taccaaacagcttggctgaaggctcattaccctgatgagtatatggcagctcttatgtcg
ggtgatatgggtaatacagatcagttggttaaatttattttagatgctaagaatatgggt
atcacggttttagcaccaaatgtaaataagagtgtctatgactgtattgcagctttaaaa
gggacgattttattgggtctaggagctatcaaaggtctaggtggtgaagcaatcaaaagt
atacttaatgagcgtgaggcaggtggtaagtgtagttctatttttgacttaactcgtaga
gtagatttgcgtaaggttaataaaaaagcactcgaagcattatgttgtgcaggagctatc
aaggatatatctaaaaatagagcaacagctttcaattctattgaaaaagctattaaaaat
gcgggttatgtgaatgaaatggcagcagctgggcaaaatgatttattcggttttacagaa
caagagagtgatactgatacagagcttgaaagagagtgtattgtagaagagtggaatctt
agagagcttttgattaatgagaaaaaagcattaggaatgtatttctcagggcatattatt
gatggtgaaagtcattggcgtaatcatgttagctttagtgatcttgagaaaatccaaaaa
ccaagcatggatggtaattctgtaagaattattgcaagtatgataacaccaccagctaga
cgaaaaactaagactggtagaattctatatattattaatattgatgatgagtttgataga
gcagattgtttgattggtgaagatgtatttgctgcagttaaagataatattcaggttgat
gatgtggttgtagtagagggtaaagttagccgcgataatcaaagagagtgcaataagcta
agtgttgataaggtacaaccaatatcacaatatattgatgagaattttagtaaagttgag
ctgaatttaagaagtcaaaatgtaaattcaactaacctaaaaaaagtattagataaccta
aagaaaaatatcgctactactgatattcaaagagaaaatgtcttagagataaaagtatct
ctagatgatgttgatgctaagtttgaatattttcgaaagccattctcggtgtatgagttt
gttaatgatattagtaggttaatagctgagggaagtacggttagtttgagtggggtttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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