KEGG   Fusobacterium vincentii 3_1_36A2: HMPREF0946_01947
Entry
HMPREF0946_01947  CDS       T02822                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
fnc  Fusobacterium vincentii 3_1_36A2
Pathway
fnc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:fnc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HMPREF0946_01947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fnc03021]
    HMPREF0946_01947
   03400 DNA repair and recombination proteins [BR:fnc03400]
    HMPREF0946_01947
Enzymes [BR:fnc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HMPREF0946_01947
Transcription machinery [BR:fnc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HMPREF0946_01947
DNA repair and recombination proteins [BR:fnc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HMPREF0946_01947
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DUF3052
Other DBs
NCBI-ProteinID: EEU31539
UniProt: C7XSI0
Position
complement(2187868..2191422)
AA seq 1184 aa
MQKLIERLDFGKIKPRGQMPHFLEFQLNSYEDFLQTNVSPNKREEKGFELAFKEIFPIES
SNGDVRLEYIGYELHEAEAPLNDELECKKRGKTYSNSLKVRLRLINKKMGNEIQESLVYF
GEVPKMTDRATFIINGAERVVVSQLHRSPGVSFSKEVNTQTGKDLFSGKIIPYKGTWLEF
ETDKNDFLSVKIDRKKKVLATVFLKAVDFFKDNNEIRDYFLETKELNLKTLYKKYSKEPE
ELLNVLKQELDGSIVKEDILDEETGEFIAETEAFINEEVINNLIENKVDKISYWYVGPES
KLVANTLMNDTTLTEDEAVVEVFKKLRPGDQVTVDSARSLIRQMFFNPQRYDLEPVGRYK
MNKRLKLDVPEEQISLTKEDVLGTIKYVIELNNGDQNVHTDDIDNLSNRRIRGVGELLLM
QIKTGLAKMNKMVREKMTTQDIETVTPQSLLNTRPLNALIQDFFGSGQLSQFMDQSNPLA
ELTHKRRISALGPGGLSRERAGFEVRDVHDSHYGRICPIETPEGPNIGLIGSLATYAKIN
KYGFIETPYVKVENGVALVDDVRYLAADEEDGLFIAQADTKLDKNNKLQGLVVCRYGHEI
VEIEPERVNYMDVSPKQVVSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLRSEAPFIGT
GLERKVAVDSGAVVTTKVSGKVTYVDGKKIIIEDKDKKEHIYRLLNYERSNQSMCLHQTP
LVDLGDKVKAGDIIADGPATKLGDLSLGRNILMGFMPWEGYNYEDAILISDRLRKDDVFT
SIHIEEYEIDARTTKLGDEEITREIPNVSESALRNLDENGVIMVGSEVGPGDILVGKTAP
KGETEPPAEEKLLRAIFGEKARDVRDTSLTMPHGSKGVVVDILELSRENGDELKAGVNKS
IRVLVAEKRKITVGDKMSGRHGNKGVVSRVLPAEDMPFLEDGTHLDVVLNPLGVPSRMNI
GQVLEVHLGMAMRSLNEGTCIATPVFDGATEEQVKDYLEKQGYPRTGKVTLYDGRTGEKF
DNKVTVGIMYMLKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAY
GASNILQEMLTVKSDDITGRTKTYEAIIKGEAMPESDLPESFKVLLKEFQALALDIELCD
EEDNVINVDEEIGIEDTPTEYSPQYEIEMTGLHEIDEDAEDFEE
NT seq 3555 nt   +upstreamnt  +downstreamnt
gtgcaaaaactcattgaaagacttgattttggaaaaattaaacctaggggtcaaatgcct
cattttcttgaattccaattaaattcttatgaagattttttacaaactaatgtgtcccca
aataaaagagaggaaaaaggatttgaactagcattcaaagagatattcccaatagaatct
tcaaatggagatgtaaggctagaatatataggatatgaattacatgaagcagaagcacca
ttaaatgatgaacttgaatgtaaaaaaagaggtaagacatattctaattcattgaaagtt
agattaagacttataaacaaaaaaatgggaaatgaaatccaagaatctttggtatatttt
ggagaagttcctaaaatgacagatagagcaacatttataataaatggagcagaaagagtt
gttgtatctcaattacatagatcaccaggtgtatcttttagtaaagaagttaatactcaa
acaggtaaggatttattttctggaaaaataattccatataaaggaacttggttagaattt
gagactgataaaaatgactttttaagtgtaaagatagatagaaagaaaaaagttttagca
actgtatttttaaaagcagtagatttctttaaagataataatgaaattagagattatttc
ttagaaactaaggaattaaatttaaaaacactttataaaaaatattcaaaagaaccagaa
gaattattaaatgttttaaaacaagaattagatggctcaatagttaaagaagatatactt
gatgaagaaacaggagaatttattgctgaaacagaagcttttataaatgaagaagtaata
aataacttgatagaaaataaggtagataaaatttcttattggtatgtaggacctgaaagt
aaattagttgcaaatactttgatgaatgacacaactttaacagaggatgaagctgttgta
gaagtatttaaaaaattaagaccaggggatcaagtgactgttgactcggctagaagcttg
ataagacaaatgttctttaacccacaaagatatgatttagaacctgtgggaagatataag
atgaacaaaagattaaaacttgatgttccagaagaacaaatttcattgacaaaagaagat
gttttaggaactattaagtatgttatagaacttaataatggtgatcaaaatgttcatact
gatgatatagataacctatcaaataggcgtatcagaggagtaggagaattacttcttatg
caaatcaaaacaggacttgctaagatgaataaaatggttagagaaaaaatgactacacaa
gatatagaaacagtaactcctcagtcattgttgaatactagaccattaaatgctttaatc
caagatttctttggttcggggcaattatcacaatttatggatcaatcaaatccacttgct
gaattgacacataagagaagaatatcagcattaggacctggtggactttcaagagaaaga
gcaggatttgaagtaagagacgttcacgattctcactatggaagaatttgtccgatagaa
acaccagaaggaccaaatattggacttattggatcacttgctacttatgctaagattaat
aaatatggatttattgaaacaccttatgtaaaagtagaaaatggagtagcattagttgat
gatgttcgttatcttgcagctgatgaagaagatggattattcatagctcaagctgatact
aaacttgataaaaataataaattacaaggtttagtagtttgtagatatggacatgaaatt
gttgaaatagaacctgaaagagtaaactatatggatgtttctcctaaacaagtggtatct
gtatcagcagggcttataccattcttggaacatgacgatgccaacagagcattgatggga
tcaaacatgcaaagacaagctgtacctttattaagatcagaagctccttttatagggaca
gggcttgaaagaaaggttgcagtagattcaggtgcagtagtaaccacaaaagtatcagga
aaagtaacttatgtagatggtaaaaaaataataattgaagataaagataaaaaggaacat
atatatagacttttaaactatgaaagatctaaccaatcaatgtgtttacaccaaacaccg
ttggttgatttaggtgataaagtaaaagctggagatataattgcagatggacctgctaca
aaattaggagatttatcattaggaagaaatattcttatgggctttatgccatgggaagga
tataactatgaagatgctatcctaatttctgatagacttagaaaagatgatgtatttaca
tctatacatatagaagaatatgaaatagatgcaagaactacaaaattaggagatgaagaa
attacaagagaaattcctaatgtgtcagaaagcgctttaagaaacctagatgaaaatgga
gtaattatggtaggttcagaagtaggaccaggggatatattagttggtaagacagcacct
aagggagaaacagaaccacctgctgaagaaaaacttttaagagctatatttggagaaaaa
gcaagagatgtaagagatacatcacttactatgcctcatggctctaagggagttgttgtt
gatattcttgaactttcaagagaaaatggagatgaattaaaggcaggagtaaataaatct
ataagagttttagttgctgaaaaacgtaaaataactgttggggataagatgtcaggaaga
catggaaacaaaggggttgtttcaagagtattaccagcagaggatatgcctttcttagaa
gatggaactcacttagatgttgtattaaaccctcttggagtaccttctcgtatgaatata
gggcaagttcttgaagtacacttaggtatggcaatgagaagtctaaatgaaggaacttgt
atagctacaccagtatttgatggtgcaacagaagaacaagtaaaagattatcttgaaaaa
caaggatatccaagaacaggaaaagtaactttatacgatggaagaacaggagaaaagttt
gataataaagttacagttgggataatgtatatgttaaaattacaccatcttgttgaagat
aaaatgcatgctagagcaataggaccttattcattggtaactcaacaaccacttggaggt
aaggcacaatttggtggacaaagacttggagaaatggaagtttgggcgttggaagcttat
ggagcatctaatatacttcaagaaatgttaactgtaaaatcagacgatattacaggaaga
actaaaacttatgaagctataattaaaggtgaagctatgccagaatcagatttaccagaa
tcttttaaagtgcttttaaaagaattccaagcattagcactagatatagaattatgtgat
gaagaagacaatgttataaatgttgatgaagaaataggaatagaagatactccaacagaa
tactcaccacaatatgaaatagaaatgactgggcttcatgaaatagatgaagatgcggaa
gattttgaagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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