KEGG   Formosa sp. Hel1_33_131: FORMB_02020
Entry
FORMB_02020       CDS       T04465                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
for  Formosa sp. Hel1_33_131
Pathway
for03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:for00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FORMB_02020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:for03019]
    FORMB_02020
   03400 DNA repair and recombination proteins [BR:for03400]
    FORMB_02020
Enzymes [BR:for01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     FORMB_02020
Messenger RNA biogenesis [BR:for03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     FORMB_02020
DNA repair and recombination proteins [BR:for03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      FORMB_02020
SSDB
Motif
Pfam: DEAD RecQ-1-like_HTH RQC Helicase_C HRDC RecQ_Zn_bind ResIII HTH_40
Other DBs
NCBI-ProteinID: AOR27264
UniProt: A0A1D7XVB5
Position
complement(212260..214449)
AA seq 729 aa
MSISTKELHIALKTFFGFDKFKGLQEQVIVSLLEKKHTFAIMPTGGGKSLCYQLPALMQD
GTAIVVSPLIALMKNQVDAIRGISDYEGIAHVLNSSLNKTEIKQVKSDIESGITKLLYVA
PESLSKAENIEFLKAQTVSFMAVDEAHCISEWGHDFRPEYRNLKHIITQIGDNIPIIGLT
ATATPKVQEDILKNLGTTDSQTFKASFNRPNLFYEILPKTDQVDNDIIRFVKQNEGKSGI
IYCLSRKRVEGLSQILQVNGIKAVPYHAGLDAKTRSKHQDMFLMEDTDIVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGKPVAEQ
EIGFALLQEVVAMAETSMSRRKFILHYFGEAFDTETGDGGNMDDNVRNPKPQTEAIEEVQ
LMLEIVSHTHEKYKSKDLVNVIIGHDNALIKSHRTNELPFFGKGSNHDVLYWMALIRQAL
VAGYLRKDIETYGVLKLTPNGREFIEQPKSFMMTEDHTYNIESNRNYNNSLDLVDVALMR
MLKDLRKSNAKKLGVPPFVIFQDPSLEDMALKYPITIEELYHIHGVGEGKAKRYGKDFVK
LIKRYVDENDIERLEDMIIKSTGLNSSLKLYIIQNIDRKLPLDDISSAKGMNMADFIREL
EAIVFSGTKLNINYWIDEIFDEDQQDEIHDYFMESESDDIEAAIEEFDGEYDDQELRLYR
LKFISEVAN
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgagtatttcgactaaagaattacatatagcacttaaaacctttttcgggtttgataaa
tttaaaggactgcaagaacaagtcattgttagtcttttagagaaaaaacacacctttgcc
attatgccaacaggaggagggaagtcactttgttatcaattacccgcgttgatgcaggat
gggacagccattgtcgtttctccattaatagcactcatgaaaaatcaagtggatgcgatt
cgaggtatttcggattatgaagggattgcacatgtattgaattcttccttaaataaaacc
gaaataaaacaagtgaaatcagatatagaatctggaatcacgaaacttttatacgtcgct
ccagagtcactttcaaaagctgagaatattgaatttttaaaagcgcaaacagtttcattt
atggcggtagatgaagcacactgcatcagtgaatggggacatgatttcagacctgaatac
agaaacttaaaacacatcattacacaaataggggataacattccaatcattggtttgaca
gcaacagcgacgcctaaggtgcaagaagatattcttaaaaatttagggacaacagactct
caaacgtttaaagcgtcttttaatagacctaacttattttacgagatacttcccaaaaca
gatcaggttgataatgacattatccgatttgtaaaacaaaacgaaggaaaatctggaatt
atctattgcctaagcagaaaacgcgttgaaggattgtcgcaaatccttcaagtgaacggg
atcaaagcagtgccatatcacgcaggcttggacgccaagacacgctccaaacatcaagac
atgtttttgatggaagacacggatatcgtggtggcaaccattgcgtttggaatgggcatc
gataaacccgatgtgcgttttgtgattcatcatgacattccaaaaagtattgaaagctat
taccaagaaacaggccgtgctggccgtgatggaggtgaaggacactgtttggcatattac
gcctataaagacatagaaaaacttgaaaaattcatgtcagggaaacctgttgccgaacaa
gaaattggctttgcgttgttgcaagaagtggtcgcaatggctgaaacgtccatgtcgcgt
cgtaaatttattttacattattttggagaagcatttgatacagaaacaggagatggtggc
aatatggatgataatgttcggaacccaaagccacagacggaagcgattgaggaagttcaa
ttaatgcttgaaattgtatcgcatacccacgaaaaatataaaagtaaagaccttgtcaat
gtcatcatagggcatgataatgcgcttataaaatcgcaccgtaccaacgaattgccattt
tttggtaaaggaagtaatcacgatgtgctttactggatggcactgatcagacaggcactc
gttgccggttacttacgcaaagacattgaaacctatggcgtcttaaaactcactcctaac
ggtcgtgaatttatagaacagccaaagtcgtttatgatgacggaagaccatacttacaac
atagaatcgaatcgtaattataacaattctttagatttagttgatgttgcactcatgcgg
atgcttaaagaccttcgtaaatccaatgctaaaaaactaggcgtccctccatttgtaatt
tttcaagatccatcgctcgaagatatggcgcttaaatatccaatcacaatagaagaactt
taccatattcatggggttggcgaaggaaaagctaagcgttatggcaaagattttgtaaag
ctcataaagcgttacgtcgatgaaaatgatattgaacgcttggaggatatgattatcaag
tccaccggattaaactcttccttgaaactttacatcattcaaaatattgatagaaaatta
cctcttgacgatatctcttccgcaaaaggaatgaatatggctgattttattagagaacta
gaagccattgtattttcgggtaccaaattaaacatcaattattggattgatgaaatattt
gatgaagaccaacaagatgaaattcatgactattttatggaatccgaatccgatgatata
gaagctgccattgaagaatttgatggggaatacgacgatcaagaattgcgtttgtatcgc
cttaaatttataagtgaagtggcaaattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (63)   
   KEGG ORTHOLOGY (1)   
   RefGene (60)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (79)   

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