KEGG   Flavobacterium psychrophilum V3-5: IA03_07525
Entry
IA03_07525        CDS       T03659                                 
Name
(GenBank) DNA/RNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
fpv  Flavobacterium psychrophilum V3-5
Pathway
fpv03420  Nucleotide excision repair
fpv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fpv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    IA03_07525
   03430 Mismatch repair
    IA03_07525
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fpv03400]
    IA03_07525
Enzymes [BR:fpv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     IA03_07525
DNA repair and recombination proteins [BR:fpv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     IA03_07525
   MMR (mismatch excision repair)
    Other MMR factors
     IA03_07525
SSDB
Motif
Pfam: UvrD-helicase AAA_19 Viral_helicase1 AAA_30 PhoH nSTAND3 AAA_11 UvrD_C DEAD AAA_22 SLFN-g3_helicase AAA_7 T2SSE PIF1 Arc_trans_TRASH AAA_16 TsaE
Other DBs
NCBI-ProteinID: AIG30323
UniProt: A0A076NVU7
Position
complement(1628533..1630434)
AA seq 633 aa
MVKTGLVLEKKDEFQEIMEHIKNGNNFLLSGGAGSGKTYSLVQVIKQVIEDNPTSKVACM
TYTNAAVKEIEERVNHDNLNVTTIHDFLWDNIKHFQKDLKSTLVKLINDEDVTKIKIENE
TVPFDYFDSLEDEIQYKEYLRLKEGIISHDELLIVANSMFQRFPKLCDILKDRYQFIFID
EYQDTHKEVIEIFLTHLNQSKKKNIIGFFGDAMQSIYPDGIGNLDEYKGDEAEKVKEVKK
DQNRRNPKLVYELANRLRVNADGLIQTHSDENNAPNMSVGIVKEGNIKFAYSNDGNLQTF
RDYLGWDFSNSKETKELNLTHNLIAGKAGFRGLMEIYDRDRIIELKNKITKKIKEDNIEI
SEEATFGEVIDQVNLPVKSSTQVGQFITQNNDLYTTARNYPFTVFRKIYLDKDQLLDDKK
QDKEDENKKGSKRDHLIKHLFKIQNNISLYQNRKYNEFLRITDFRYNFKNIEQKRLLQKN
IIELIDVGDKTIEQIITEANEKGICLVDDNLMRFITEKEYVYNRVKNIRFSEFQKLYDYL
EGATPFSTQHKTKGDEFNNVLVILDNGKWNDYNFEYLFLNIGSPSVLERTQKIFYVCCTR
AKENLAVYYHNPKPTVIEKAKELFGAKNVVCLD
NT seq 1902 nt   +upstreamnt  +downstreamnt
atggttaaaacaggattagttttagaaaagaaagatgagtttcaagaaattatggaacac
atcaaaaatggtaataactttcttttaagtggtggagctggaagcggaaaaacctattct
cttgtacaagttattaaacaagttattgaagataatccaacttctaaagttgcttgtatg
acatatacaaatgcagctgttaaagagattgaagaaagagtaaatcacgacaatctaaat
gttaccaccatacacgattttctttgggataatatcaagcattttcaaaaagatcttaaa
tctactctagtaaaattaataaatgatgaagatgtaacaaaaataaaaattgaaaatgaa
actgtgccatttgattattttgatagtttagaagacgaaattcaatacaaagaatattta
cgcttgaaagaaggtattatttctcacgatgaattattaattgttgccaacagtatgttt
caacggtttccaaaactatgtgatattttaaaagaccgataccaatttatatttattgat
gaatatcaggatacgcacaaagaagtaattgaaatatttcttactcatttaaatcaaagt
aaaaagaaaaatataattggtttctttggcgatgctatgcaatctatttacccagatggt
atagggaatttggacgaatataaaggtgatgaagctgaaaaggtaaaagaagttaaaaaa
gatcaaaaccgaagaaatccaaaattggtatatgaattagcaaacagattacgagttaat
gctgatggattaattcaaacccattccgatgaaaataatgcaccaaatatgtcggtagga
atcgtaaaggagggtaatataaaatttgcttattcaaatgatggtaatttacaaaccttt
agagattatttaggatgggatttttcaaattcaaaagaaacgaaagaattaaatttaaca
cataatttaattgctggaaaagctggattcagaggtttaatggaaatatatgatcgtgat
agaataatcgagctaaaaaataagattacaaaaaaaatcaaagaagataatatcgaaatt
tctgaagaagcaacgtttggagaagttatcgatcaagtcaatttacctgtaaaatcttca
acacaagtggggcagtttatcactcaaaataatgatttatacacaactgcaaggaattat
ccatttacagtttttagaaaaatatacctagacaaagaccaattattagacgataaaaaa
caggataaagaagatgaaaataaaaaaggttcaaaaagagaccatttgataaagcatctt
ttcaaaattcaaaataatatttcattatatcaaaacagaaaatacaatgaatttttaaga
attactgatttcagatataattttaaaaatattgaacaaaaacgattattacaaaaaaac
ataattgaattaattgatgttggagataaaacaattgaacaaataattacagaagccaat
gaaaaaggaatttgtcttgttgatgataatttgatgagatttataactgaaaaagaatat
gtttataatcgagtaaaaaatataagattttctgaatttcaaaagctatatgattattta
gaaggtgctacgccattctcaactcaacataaaacaaaaggcgatgaattcaacaatgtt
ttagttattttagataatggtaaatggaatgattataacttcgaatatttgtttttaaat
attggttcaccaagtgttttagaaagaactcaaaaaatattttacgtttgttgtacgaga
gcaaaagaaaatttagctgtttactatcataatccgaaaccaacggttattgagaaggca
aaagaattatttggagctaaaaatgtggtttgtttagattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (17)   
   Pfam (17)   
All databases (28)   

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