KEGG   Francisella philomiragia GA01-2794: LA55_1408
Entry
LA55_1408         CDS       T03620                                 
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
fpz  Francisella philomiragia GA01-2794
Pathway
fpz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fpz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LA55_1408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fpz03019]
    LA55_1408
   03009 Ribosome biogenesis [BR:fpz03009]
    LA55_1408
Enzymes [BR:fpz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     LA55_1408
Messenger RNA biogenesis [BR:fpz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LA55_1408
Ribosome biogenesis [BR:fpz03009]
 Prokaryotic type
  rRNA processing factors
   LA55_1408
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 Anti-TRAP DnaJ_CXXCXGXG Flu_C_NS1
Other DBs
NCBI-ProteinID: AJI52651
UniProt: A0A0B6D196
Position
1422045..1424714
AA seq 889 aa
MKKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNADGGGISRRVEGEDRERLKKYLKDLNIPKNMSVIARTACVECSFEELKHD
FDTLVELWDSIFKAYHKIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ
LGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMAFYPNRKQVEEKL
MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKVMLIPNFNMESPKF
QMQRIWGTSYKSNRTSSDLIEDVFNVEIPKAGKKKIAAVELTKPTSNDQNLDAKEDKSQE
NKSIDANTTQDNKKESNTQQESKKKGFFSKLLTKLTGSTEDIVAENEKPQNKQNNNKDNA
QKPQKSQDKGPQKGNNQRDDRKGNNNNNDRNDNKNNNKGQKPQVQKSQDNRQERDNGQRN
DRRNNDNRNDRNKNKSGNDKFDKKSNNRNNSRSNNLNLNNAEEVVDITQLKYQNQTAEKT
DNIKKVISKNPEEFISVMVKDVLENYDSLKDDGATKVATQEKAKTNKYLKFDTVSVDKEI
NILKEAARQAEETVKLESIEAESNSIHEEIKETIEIVDEAVVKEQQPKKAKLDKDDKTSE
QNNTKKEKAKTVKNNKKEKTVEKVTKQNQPEPEYISYSAALDFESQSII
NT seq 2670 nt   +upstreamnt  +downstreamnt
atgaaaaaaatactaataaatagtaaaagtagtgaagaaacaagaattgctactttagat
aacggaaaacttattgacttagatatcgagaatgttgatagagaacaaaaaaaagctaat
atttataaaggctacatttctagaatcgaacctagtttaaatgcgatatttgtcaactat
ggtgaagaaaagaacggttttttaccattcaaagaagtttctgaatattatctaaaagac
gtaccaaatggtgagaatattgcaccccttctttcagagggtcaagaattaatagttcaa
atagacaaagaggagcgtggtgataaaggtgctgctttaactacatttattacacttgct
ggctcatatatggttttactaccaaacaacgcagatggtggtggtatttcacgtcgtgta
gaaggtgaagatagagaaagactgaaaaagtatttaaaggatctaaatattcctaaaaac
atgagcgtaattgctagaacagcttgtgttgagtgttcttttgaagagttaaaacatgat
ttcgacactctagttgagttatgggattcaatattcaaggcttaccacaaaattaaaaag
cctgccctacttcacaaagagagtgacataattgtcagaacagttagagatcatctaaaa
gaagacgtcaaagaaattattgtagactctaaagaatgctttgaagatgttaaaagacaa
cttggtctacttagacaaagttttgatataaacaaagtaaagttatacaacgaagaacta
ccaatatttgctcaatttggcatagaccaacagatagagaatgcttacaaaagagaaatt
agattaccttctggtggatctattgtaattgacacaacagaagctttagttgccattgat
gttaactcatctcgcgctaacaaagctgaagatgttgaaacaacagcttttaaaacaaac
ttagaagctgctgaagaagttgctcgtcaacttagaattagagatcttggtggtcttgtt
attgttgattttattgatatggcattctatccaaatagaaagcaggttgaagaaaagcta
atggaagcgcttcaacaagatagagcacgcatccagatgtcacgtatatccaaacttgga
cttgttgaaatatctagacaacgtttaagttcatcaattaatgaaagtgtaatgcaaaag
tgccctcgttgtgatggtcatggcttcattaaaactactcaagctactgcgcttactatt
ttacgcaaaattagagcagaagctatcaaagaagatacaaatgagatacgtgttcaagta
ccagttgatatagctgcatatatactaaatgaaaaaagagatagtatcgttgaaatcgaa
agaatctctgaagtcaaagttatgctaattcctaacttcaacatggaatctccaaagttt
caaatgcaaagaatttggggtacaagctacaaatcaaatcgtactagctctgacttaata
gaagatgtatttaacgttgaaatccctaaagcaggaaaaaagaaaattgctgcggttgag
ctaaccaaaccaacgtctaacgatcaaaacttagatgctaaagaagacaagtctcaagaa
aataagagcattgatgccaatactactcaagacaataaaaaagaaagtaatacgcaacaa
gaatcaaagaaaaaaggcttctttagcaaattattaactaagcttacaggtagtactgaa
gatatcgttgctgagaatgaaaaacctcaaaataagcagaacaacaataaagacaatgct
caaaaacctcaaaagtctcaagataaaggacctcaaaaaggtaataatcagcgtgacgat
cgtaaaggtaataacaataacaatgatcgcaacgataataaaaataataataaaggtcaa
aaacctcaagtccaaaagtctcaagacaatagacaagaaagagataatggccaacgtaac
gatcgtagaaataatgataacagaaatgatcgtaacaagaataaatcaggtaatgataaa
tttgataaaaaatcaaacaatcgtaacaacagcagaagtaataatctaaatcttaataat
gctgaagaggttgtagatattactcagcttaaatatcagaatcaaacagcagaaaaaaca
gataacattaagaaggtaatatctaaaaaccctgaagagtttatctctgttatggttaaa
gatgttttagaaaactatgatagcttaaaagatgatggagctacaaaagttgctacccaa
gagaaagcaaaaaccaataaatacttaaaatttgatactgtttcagtggataaagaaata
aatattcttaaagaagctgctagacaagctgaagaaactgtgaaacttgaaagtatagaa
gcagaaagcaatagtattcatgaagaaataaaagaaactattgaaatagtagatgaggct
gttgtaaaagaacaacaacctaaaaaagccaaattagataaagatgataaaacatctgaa
caaaacaatactaagaaagaaaaggctaaaactgttaaaaataacaaaaaagaaaagaca
gtagaaaaagtaactaaacaaaatcaacctgaaccagaatatataagctattctgcagct
cttgattttgaatctcagtcaataatctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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