KEGG   Frankia sp. EAN1pec: Franean1_1714
Entry
Franean1_1714     CDS       T00608                                 
Name
(GenBank) DNA-directed RNA polymerase, omega subunit
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
fre  Frankia sp. EAN1pec
Pathway
fre03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:fre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Franean1_1714
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fre03021]
    Franean1_1714
   03400 DNA repair and recombination proteins [BR:fre03400]
    Franean1_1714
Enzymes [BR:fre01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Franean1_1714
Transcription machinery [BR:fre03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Franean1_1714
DNA repair and recombination proteins [BR:fre03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Franean1_1714
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: ABW11152
RhizoBase: Franean1_1714
UniProt: A8LE17
Position
2048984..2049268
AA seq 94 aa
MSGTVAQPEGITNPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVE
TTSAQEKPLSIALREINSGLLTHETITDPLPPIS
NT seq 285 nt   +upstreamnt  +downstreamnt
gtgtccggtactgtcgcccagcccgagggcatcacgaacccgccgatcgacgagctgctc
gaggccaccgactcgaagtacagcctcgtcatctacgcggcgaagcgggcccgccagatc
aacgcctactactcccagctcggcgagggcctgctggagtacgtcggcccgctggtggag
acgaccagcgcccaggagaagccgctgtcgatcgcgctccgcgagatcaactccggtctg
ctcacgcacgagacgatcacagacccgctgccgccgatctcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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