KEGG T00608: Franean1

Frankia sp. EAN1pec: Franean1_5169

Entry

Franean1_5169 CDS T00608

Gene name

ligC

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

fre Frankia sp. EAN1pec

Pathway

fre03410	Base excision repair
fre03420	Nucleotide excision repair
fre03430	Mismatch repair
fre03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:fre03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:fre03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:fre03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:fre03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

RhizoBase:

UniProt:

Position

complement(6201061..6202287)

AA seq 408 aa
MREDRRVDLPVTPPVKPMLARAAPQIPPDMLYEPKWDGFRALVFRDGAELEITSRNTRPM
TRYFPELVEVLLAALPDRCVLDGEIVVVGPNGLDFEELSQRVHPATSRVAKLALETPVSF
VAFDLLALGDEAFTDQPFARRRAVLEEVLAGHAGPAAPGTAPARRIPSGVYLTPSTGELD
MARQWFELYEGAGLDGLVAKPPDGAYQPDKRAMFKIKHDRTADCVVAGYRPHKNDPEAVG
SLLLGLYADPADEADPENATDPARESPLLSVGVTSAFPMARRRELVRELAHLVVPIDSHP
WARQGPENAAQPGGDAGEEPAAAAGQPARTPWDVGESRWARGRDLSFVPLRPELVVEVRY
DHMEGPRFRHTTQFVRFRPDRDPGGCTYAQLERPVRFDIADVLRIPPD

NT seq 1227 nt +upstreamnt +downstreamnt
atgcgcgaggatcggcgggtggacctgcctgtgacaccgccggtgaagccgatgctcgcc
cgcgcggcgccgcagatccccccggacatgctgtatgagccgaagtgggacggcttccgc
gccctggtcttccgtgacggggccgagctggagatcacctcgcgcaacacccggccgatg
acccgctacttccccgagctggtcgaggtgctgctcgcggcactgcccgaccgctgcgtg
cttgacggcgagatcgtcgtcgtcggcccgaacggactggacttcgaggagctgtcgcaa
cgggtgcatccggcgaccagccgggtggcgaagctcgcgctggagaccccggtctcgttc
gtcgcgttcgacctgctggcactcggtgacgaggcgttcacggaccagccgttcgcccgg
cggcgcgccgtgctcgaggaggttctcgccggccacgccggcccggctgcgcccggaacg
gcaccggcccggcggatcccgagcggggtctacctcacgccctcgaccggcgagctcgac
atggcccggcagtggttcgagctctacgaaggcgcggggctcgacgggctggtcgccaag
ccgccggacggggcgtaccagccggacaagcgcgcaatgttcaagatcaaacatgaccgc
accgccgactgcgtcgtggccggctaccggccgcacaagaacgatccggaggcggtcggg
tcgctgctgctcgggctctacgccgaccccgcggacgaggccgaccccgagaacgcgacg
gacccggctcgggaaagcccgctgctgtccgtcggggtcacctcggccttcccgatggcg
cgccggcgggagctcgtccgcgagctggcccatctcgtggtgccgatcgactcccacccc
tgggcccgccagggcccggagaacgccgcgcagccgggcggcgacgcgggcgaggaaccg
gcagcggccgcggggcagccggcgcgcacgccctgggacgtcggggagagccggtgggcc
cgtggccgtgacctctcgttcgtcccgctgcggcccgagctggtcgtcgaggtgcgctac
gaccacatggagggaccgcgcttccggcacaccacgcagttcgtccgcttccggcccgac
cgtgaccccggcggatgcacctacgcccagctcgagcgtccggtgcggttcgacatcgcc
gacgtcctgcgcatcccgccggactga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-FRE (1)   
   OC (1)   
   RHIZOBASE-FRE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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