KEGG   Francisella sp. FSC1006: LO80_05120
Entry
LO80_05120        CDS       T03403                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
frf  Francisella sp. FSC1006
Pathway
frf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:frf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LO80_05120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:frf03021]
    LO80_05120
   03400 DNA repair and recombination proteins [BR:frf03400]
    LO80_05120
Enzymes [BR:frf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LO80_05120
Transcription machinery [BR:frf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LO80_05120
DNA repair and recombination proteins [BR:frf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LO80_05120
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Minor_capsid_1
Other DBs
NCBI-ProteinID: AIT09405
UniProt: A0A097EPB5
Position
complement(1019521..1023774)
AA seq 1417 aa
MNNGILHQNYNSKKFDIIKISLASPEVVRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPVKDYECLCGKYKRLKHRGVVCERCGVEVEKASVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDEEYAEALENYGYEFEASMGA
EAIRDLLSDTDLESEIETLQAEYAESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQES
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGYATTIKQAKRMVELEEAAVWDILEIVINEHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREREGARGEGKLFSGYDDVSRAYNSGTV
DIHAKIKLRIDRQVFDTKGNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEIS
KIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDDMTIPDNKEAKVEEAEKEIK
HITEQYQSSLITENERYNNIINIWGKTSDEVGAAMMEEISKDTVMVDGEEKEVESFNSVY
MMANSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDEGLMFSAIVEDGEVKVPLAERALGRT
LAADVVTEKGIVLLEEGTLLDENLVELLDDNGIDMIKVRSPITCNTRRGLCAKCYGRDLA
RERKVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGVTVSDIKVKTAGKIKFKNIR
TVTNKEGQEIVISRAGEIIVSDTMGRVREQHKIPMGANVPLASGKAVEIGDVIATWDPHA
QPLITDVAGKVVLEDVIDGITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKVVDEKG
NELKSITLAVGAVLNVSDDTVLEVGDVVAKIPLEGSKNKDITGGLPRVAELFEARRPKEA
AVLSPCDGMVRLGNRDTKEKQRIEILDKNGHIVEEILLPKSRHLVVFDGESVVKGDVLAD
GPTDPHDLLKFKGLEAFADYILVEAQSVYRMQGVVINDKHIETIVRQMLRKAIVLDEGDS
KFVKNESVELVRILEENDILREQEKREIEFEPVLMGITRSSLSTESFLSAASFQETTRVL
TEASINSQVDQMRGLKENVLIGRLIPTGTGLAVRKETDKIEKMREELGVEDAAAFKAIAS
GLANDEVSSDENFDIEEKDTNDDIEESLRNALESLDF
NT seq 4254 nt   +upstreamnt  +downstreamnt
gtgaataacggtatcctacatcaaaattacaatagtaaaaagtttgatattattaaaata
tctttagcatctccagaggttgttcgttcatggtctcatggtgaagttaaaaaacctgaa
actattaactatagaacatttaaaccagaaagagatggtttattctgtgctaaaatcttt
ggtcctgtaaaagattatgagtgtctttgtggtaagtacaaaagacttaagcatcgtggc
gtagtatgtgagcgttgtggtgttgaagttgaaaaagcttccgtacgaagagaaagaatg
ggtcatattgatttagtatgtcctgttgtacatatttggtacttgaaatcactaccttct
agaattggcttgttcttagatatgccgttaaagaatgtagaaaaagtattatattttgag
tcatatattgttacagaccctggtatgactccattagagaaaaagcagcttcttacagat
gaagagtatgcagaagctctagaaaattatggctatgaatttgaagcatctatgggtgct
gaggctattagagatttactatcagatacggatcttgagtctgagatagaaactttacaa
gcagaatatgcagaaagtaaatctacagctaaaaaagaaaaagctattaaaagattgaga
cttcttgaaactttccaagcatctggtaataaacctgagtggatggtaatgacagtattg
ccagttcttccgccagatttaagaccgcttgtaccaatcgaaggtggtagatttgcaact
tctgatctaaatgatttatatcgtagagtaatcaatagaaataataggttgaaaaaacta
ttagatcttaatgctccagatattattgttagaaatgaaaaaagaatgcttcaagaatca
gttgatgcgttactagataatggtagaagaggtagagctgtaactggttccaacaaacgc
ccacttaaatctttagcagatatgattaaaggtaagcaaggtcgtttccgtcaaaaccta
cttggtaaacgtgttgattattctggacgttctgtaattactgtaggcccatctttaaga
ttacatgagtgtggtcttcctaagaagatggctttagagctattcaaaccatttgtgtac
tctaagttaagactaggtggctatgcaactactattaaacaagctaagagaatggttgag
cttgaagaagctgctgtatgggatattctagaaattgttattaatgaacatccggtactt
ttaaaccgtgcccctacactacatagactaggtattcaggcatttgaacctaaacttatt
gaaggtaaagctatacagctgcaccctctagtttgtgcggcatttaacgctgactttgat
ggtgaccaaatggctgttcacgtacctttaactgttgaatctcagttagaggctcgtgtg
ttaatgatgtctacaaataacatcctatcaccagcatctggtcaaccgattattactcca
actcaggatattgtattaggtttatattatatcactagagaaagagaaggtgcgcgtgga
gaaggtaaattattctcaggttatgatgacgtaagcagagcttataactctggaactgta
gatattcatgcaaaaattaaattaagaattgatagacaagtatttgatacgaaaggtaat
acttataatgaaaaaggtgtagttaatactactgtaggtagagcacttcttttaaatata
ttgccagaaggtctatctttttctttattaaacaaagtattagttaagaaagaaatttct
aaaattataaaccaagcattcagggtgctaggtggtaaagctactgttgttttagctgat
aaattaatgtatgcaggtttcaaatattcaacgctatcaggtgtttctgtgggtgttgat
gatatgacgattcctgataataaagaagctaaagtagaagaagcagaaaaagaaattaaa
catattacagagcaatatcagtcttcattaattacagagaatgaaagatataacaatatc
atcaatatttggggtaaaacttctgatgaagttggagccgctatgatggaagaaatttct
aaagatactgtaatggttgatggtgaagagaaagaagttgaatcatttaattctgtatat
atgatggctaactctggtgcaaggggttcttataaccaaatgagacagcttgctggtatg
cgtggtctaatggctaaaccagatggaacgatgattgaaactgcaattacggcaaacttt
agagaaggtttgtcagtattgcagtactttacatctacccatggtgctcgtaaaggtctt
gcagatacagcacttaagacagcaaacgcaggttacttaactcgtagacttgttgatgtt
gctcaggatcttgttgttattgaagaagattgtggtactgatgaaggtctaatgttctca
gctatcgttgaagatggtgaggttaaagtgcctctggcagagagagctcttggtagaact
ttggcggctgatgttgtaacagagaaaggtattgtactattagaagaaggcactttatta
gatgagaatctagttgaattgcttgatgataatggtattgatatgatcaaagttagatcg
cctattacatgtaatactcgtagaggtttatgtgctaagtgttatggtcgtgaccttgct
cgtgaaagaaaagtcaatgttggcgaatctgttggtgtaatcgctgctcaatctattggt
gagccaggtacacagcttacaatgagaacgttccatactggtggtgcagcatctcttggt
gtgacggtttctgacattaaagttaaaacggctggtaagatcaagtttaaaaacattaga
acagtaactaacaaagaaggccaagagattgtaatttctcgtgctggtgagattatagtt
tctgatactatgggccgtgttagagagcaacataaaatccctatgggtgcaaatgttcct
ctagcaagtggtaaagctgtagaaatcggtgatgtaatcgctacttgggatccacatgct
cagccattgattactgatgttgctggtaaggttgttcttgaggatgttattgatggtatt
acatcgaagcatacttatgatgatctaactggtcagcaaactattgagattacttctata
tcccaaagaactacatctaaaaacttaaaacctgttgttaaggttgttgatgaaaaaggt
aatgaacttaaatcaataactttagcagttggagcggtactaaatgtatctgatgataca
gtgctagaggttggtgatgtcgttgctaagattcctcttgaaggctctaagaacaaggat
attactggtggtcttccacgagttgctgaattatttgaggcaagacgtcctaaagaggct
gctgtactttctccatgtgatggtatggttaggcttggtaatagagatacgaaagagaag
caaagaattgagattctagataagaatggtcatattgttgaagagatcctattacctaaa
tctcgtcatttagtagtgtttgatggtgagagtgtagttaaaggtgatgttttggcagat
ggtcctacagatcctcatgatctacttaaatttaagggtctagaagcttttgcagactat
attcttgttgaagctcagtctgtatatcgtatgcaaggtgttgtaattaatgataaacat
attgaaacgattgtaagacaaatgctaagaaaagctattgtccttgatgaaggtgatagt
aagtttgttaagaatgagagtgttgagcttgttagaatcttagaagaaaatgatattcta
cgtgagcaagagaagagggaaattgagtttgaacctgtattaatgggtatcacaagatct
tctctatctacggagtcattcttatcagcagcttccttccaggaaactacaagagtattg
acagaggcttcaataaactctcaagttgatcagatgagaggtcttaaagagaatgttctg
ataggtagattaataccaacaggtacaggtctagctgttagaaaagaaaccgataagatc
gagaaaatgagagaagagttgggtgttgaagatgctgctgcatttaaagcaattgcctct
ggtctagctaatgatgaagtttctagtgatgagaactttgatatcgaagaaaaagatact
aatgatgatattgaagaatctctaagaaatgctcttgaatcattagatttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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