KEGG   Candidatus Protofrankia datiscae: FsymDg_3933
Entry
FsymDg_3933       CDS       T01530                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
fsy  Candidatus Protofrankia datiscae
Pathway
fsy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:fsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FsymDg_3933
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fsy03021]
    FsymDg_3933
   03400 DNA repair and recombination proteins [BR:fsy03400]
    FsymDg_3933
Enzymes [BR:fsy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     FsymDg_3933
Transcription machinery [BR:fsy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     FsymDg_3933
DNA repair and recombination proteins [BR:fsy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      FsymDg_3933
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L HHH_5 AbiEi_4
Other DBs
NCBI-ProteinID: AEH11208
UniProt: F8AV05
Position
complement(4623577..4624629)
AA seq 350 aa
MLIAQRPTLIEESISEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
HEFSTVPGVKEDVTDLILNLKELVVSSENDEPTVMYLRKQGPGVVTAADIAPPAGVEVHS
LDLALATLNDKGKLEIELTVERGRGYVSAAQNKQPGQEIGRIPVDSIYSPVLKVTYKVEA
TRVEQRTDFDRLIVDVETKQSISPRDAMASAGKTLVGLFGLAQELNAEAEGVDIGPSAAD
AALAADLALPIEEMDLTVRSYNCLKREGIHTIGELVSRSEADLLDIRNFGQKSIDEVKTK
LAAMALQLKDSPPGFDPRHAVDTYGTDTYSAAPFSDSADDSSEFVETEQY
NT seq 1053 nt   +upstreamnt  +downstreamnt
atgcttatcgcccagcgtccgacgctgatcgaggagtcgatctcggagttccgctcgcgg
ttcgtcatcgagccgcttgagccgggtttcggctacaccctcggcaactcgctgcgccgg
accctgctgtcctccatccccggcgcggcggtgaccagcatccgtatcgacggggtgctg
cacgagttctccaccgtccccggtgtgaaggaggacgtcaccgacctgatcctgaacctg
aaggaactggtcgtcagctcggagaacgacgagccgaccgtgatgtacctgcgcaagcag
ggcccgggagtggtgaccgcggcggacatcgctccgccggccggcgtcgaggtccacagc
ctcgacctggcgctggccaccctcaacgacaagggcaagctcgagatcgagctgaccgtc
gagcgcggtcgcggctacgtcagcgccgcccagaacaagcagccggggcaggagatcggc
cggatcccggtggactccatctactccccggtgctcaaggtcacctacaaggtcgaggcg
acccgtgtcgagcagcgcaccgacttcgaccggctcatcgtggacgtcgagacgaagcag
tcgatctcgccgcgggacgcgatggccagcgccggcaagacgctcgtcggcctcttcggc
ctcgcgcaggagctgaacgccgaggcggagggcgtcgacatcggcccgtccgccgcggac
gccgcgctcgccgcggatctggcactgccgatcgaggagatggacctcaccgtccgttcc
tacaactgcctcaagcgcgagggcatccacaccatcggtgagctggtgtcccgcagcgag
gcggatctgctcgacatccgcaacttcgggcagaagtcgatcgacgaggtcaagacgaag
ctcgccgcgatggctctccagctcaaggactccccgcccgggttcgacccgcggcacgcg
gtggacacctacggcaccgacacctactcggcggctccgttcagcgactccgctgacgac
agctctgagttcgtcgaaaccgaacagtactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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