KEGG   Fluviicola taffensis: Fluta_0847
Entry
Fluta_0847        CDS       T01455                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
fte  Fluviicola taffensis
Pathway
fte03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fte00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Fluta_0847
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fte03019]
    Fluta_0847
   03400 DNA repair and recombination proteins [BR:fte03400]
    Fluta_0847
Enzymes [BR:fte01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Fluta_0847
Messenger RNA biogenesis [BR:fte03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Fluta_0847
DNA repair and recombination proteins [BR:fte03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Fluta_0847
SSDB
Motif
Pfam: DEAD RecQ-1-like_HTH RQC Helicase_C RecQ_Zn_bind HRDC ResIII HTH_40 HHH Lip_prot_lig_C
Other DBs
NCBI-ProteinID: AEA42848
UniProt: F2IJG0
Position
complement(961735..963915)
AA seq 726 aa
MDQFDLKEALRKFFGFDQFKGHQEKIITNVLQKKNTFVIMPTGGGKSLCYQLPALLSEGT
AIVVSPLIALMKNQVDAIRNVSDHNSIAHFLNSSLSKTEINRVKEDILAGKTKLLYVAPE
SLTKQENIDFLTSVPISFFAIDEAHCISEWGHDFRPEYRRLREIFEKISDVAIIALTATA
TPKVQADIQKNLNMMDADLFKSSFNRDNLYYEIRAKQNVEKEIIKYIRQREGKSGIIYCL
SRKKVEETAELLQVNGINALAYHAGLDATTRARHQDMFLMEEVDVIVATIAFGMGIDKPD
VRFVIHHDIPKSLESYYQETGRAGRDGGVGECITFYSYKDIEKLEKFLQGKPVSEQEIGK
QLLSEIVSYSETSVCRRKFILHYFGEEFDEQGCHEMCDNCKFPREKIEGKEFVHQLLQAV
DFLQEQQKSKHVCAFLAGGVTAEIKSYRHDQAPLFGVGKDRDEHFWNAVIRQTLVAGLLY
KDIETYGTLKFTERGREFLAAPKPFTLLKQHDYSASDEDDSMVSPGKGGAFDEVLYGLLI
DLRKSLSKQNNIPPFVIFQEPTLKDMCFQYPITIDELTNCQGVGAGKAQRYGEPFIEMIL
SYVEENNIDRPQDLVVKSLINKSVLKVQLIQNIDRKLPLEDIGRAQGKSMDEVIEEIEAI
VSSGTRVNINYYIDDILDSDNQEEIYEYFSEAETDDLTIAYHEFDGDYTEEELRLMRIKF
MSEMAN
NT seq 2181 nt   +upstreamnt  +downstreamnt
atggatcaattcgatctaaaagaagcacttaggaagttttttggttttgatcagtttaaa
ggacatcaagaaaaaataattacaaatgtcttacaaaagaagaacacattcgtaattatg
cccactggtggtggaaagtctttatgctatcagcttccggctttgttatctgaaggtact
gcaattgtagtgtctccattaattgccttgatgaaaaatcaagtggatgcaattcgcaat
gtgagcgatcacaattcgattgcgcattttttgaattcttcgttgagcaagacagaaatc
aatcgggtaaaggaagatattcttgctggtaaaactaaattgctttatgtagctccagaa
tctcttacgaaacaggaaaatattgattttttaacttcggtgccaatttctttttttgcg
attgatgaggcgcattgtatttctgagtggggacatgatttccgtccagaatatagacga
ttaagagagatttttgagaaaatttccgatgttgcgattattgctttaacagcaacagca
actccaaaagttcaggctgatattcaaaagaatctcaatatgatggatgctgatttattt
aagtcttcattcaatagggataatttgtactatgaaatccgtgcgaaacaaaatgtggaa
aaggaaatcattaaatacattcgtcagagagaaggtaaatcaggaattatttattgtctt
tcgcgtaaaaaagtagaagaaacagctgaattacttcaagtaaacggaattaatgcattg
gcttaccatgctggattagatgcaactactcgtgcgagacaccaagatatgttcttgatg
gaggaggtagatgtgattgttgcgaccattgcatttggaatgggaatcgataagccagat
gttcgttttgtgattcatcacgatatcccaaaatcattagagagttattaccaggaaacg
ggtagagctggtcgagatggtggagttggtgagtgtatcacattttactcgtacaaggac
attgagaaattggagaaattcttacaaggaaagcctgtttctgaacaagaaatcggtaaa
cagttgttgagcgagattgtttcttattctgaaacatctgtttgtcgccgaaaattcatt
ttacattatttcggagaagagtttgatgagcaaggatgtcatgaaatgtgtgacaattgt
aaattcccaagagaaaaaatcgaagggaaagaattcgttcatcaattactccaagcagtt
gattttcttcaagaacaacaaaaatcgaaacacgtttgcgctttcttagctggaggtgta
acggctgaaattaaaagttaccgccacgatcaagctccattgtttggtgttgggaaagat
cgtgatgagcatttttggaatgctgttattcgtcaaacacttgttgcaggtcttttatac
aaagacattgagacttatggaacgcttaagtttacggaaagaggaagagagtttcttgca
gcacctaagccatttaccttattgaaacaacacgattattcagcatctgatgaggatgat
tctatggtttctcctggaaaaggaggggctttcgatgaagtgttgtatggcttgttgatt
gatttgagaaaatcgctttcaaagcaaaataacattcctccatttgttattttccaagag
ccaactttaaaagacatgtgctttcaatatccaatcacgattgatgagttaacaaattgt
cagggagttggagcagggaaagcacaaagatacggagaaccatttattgagatgattctc
tcttatgtggaagaaaataatattgacagaccgcaagatttggtggtgaaatccttgatc
aataaatcggtgttaaaggttcaattgattcaaaatattgaccgaaaattacctttggaa
gatattggtagagctcaagggaaatcaatggatgaagtcattgaggagattgaagcaatc
gtttcttcgggaactcgggtgaatatcaattattacatcgatgatattttagattcggat
aatcaagaagagatttacgaatatttctccgaagctgaaaccgatgatttgacgattgct
tatcatgaatttgatggtgattacacggaagaggagttgcgtttgatgcgtattaagttt
atgagtgaaatggctaattag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (226)   
   KEGG ORTHOLOGY (1)   
   RefGene (223)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (244)   

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