KEGG   Francisella tularensis subsp. tularensis SCHU S4: FTT_1227
Entry
FTT_1227          CDS       T00214                                 
Symbol
rne
Name
(RefSeq) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
ftu  Francisella tularensis subsp. tularensis SCHU S4
Pathway
ftu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ftu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FTT_1227 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ftu03019]
    FTT_1227 (rne)
   03009 Ribosome biogenesis [BR:ftu03009]
    FTT_1227 (rne)
Enzymes [BR:ftu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     FTT_1227 (rne)
Messenger RNA biogenesis [BR:ftu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     FTT_1227 (rne)
Ribosome biogenesis [BR:ftu03009]
 Prokaryotic type
  rRNA processing factors
   FTT_1227 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 Anti-TRAP DnaJ_CXXCXGXG Flu_C_NS1
Other DBs
NCBI-GeneID: 3191610
NCBI-ProteinID: YP_170185
UniProt: Q5NFK7
Position
1243633..1246290
AA seq 885 aa
MKRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPEGGGISRRVEGEDRERLKKYLKELNIPKNMSVIARTACVECSFEELKHD
FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ
LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF
QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT
DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ
RQQQHNKAQKDNNQRNERNNSNNKNERNKNRNNKGAKPQIAQENKPQKDNSQRSDLNANG
NSNNDKNERNKNKSNYDKFDKKSNNRNSRSNNLNLNNAEEVIDITQLKYQNQTAIAKTDN
IKKVISKNPDEFISVMVKDVLENYDSLKDDGATKIATQEKIKTNKYLKFDTVSVDTEIAL
LNEVAKSNQTVGVEQITAETEESLSIVDKVDDITIPEVVVEQEKPAKVVKETNQTSEAKP
KKEKQTTTKNNKKEKPAEKEMKQNQAKPEYINYSPAIDFESQALI
NT seq 2658 nt   +upstreamnt  +downstreamnt
atgaaaagaatactaataaatagcaagagtggcgaagaaacaagaattgccaccctagat
aatggcaaattaatagatttagacattgagagcgttgatagagaacaaaaaaaagcaaat
atttacaaaggttatatttcaagaattgaaccaagtttaaatgctatatttgttaactat
ggtgaagaaaaaaatggttttttaccatttaaagaagtatcagagtattatctaaaagat
gttccaaacggtgaaaatatcgcacctttgctttcagaggggcaagaactaattgttcaa
atagataaagaagaacgaggcgataaaggtgcagcattaactacatttattaccttggct
ggttcgtatatggtgttattgccaaataatcctgaggggggtggtatttcccgtcgtgtc
gaaggtgaagatagagaaagattaaaaaaatatctcaaagaattaaatatcccaaaaaat
atgagcgtaatagcaagaactgcttgcgttgagtgctcttttgaagaattaaaacatgat
tttgatactctagttgaattatggggatctatttcacaagcttaccatagaatcaaaaaa
ccagctttattacataaagaaagtgacattattgtaaggacagttagagatcacttaaaa
gaagatgttaaagaaatcatcgttgattctaaagagtgctttgaagatgtcaaaagacag
cttagtttacttagacaaagttttgatataaacaaagtaaaactatacaacgaagaatta
ccattatttgctcagtttggtattgatcaacaaatagaaaatgcttataaaagagaaatt
cgcctaccatccggcggttctatcgtcatagatactacagaggcacttgtagcaatagat
gtaaactcatctcgcgctaacaaagccgaagatgtagaaactacagcatttaaaactaac
ctagaggctgcggaagaagttgctcgtcaacttagaattagagacttaggtggtcttgtt
atagttgactttattgatatgtctttctacccgaatcgaaaacaagtcgaagaaaaacta
atggaagcactacaacaagatagagcacgcatccaaatgtcacgcatttctaaacttgga
cttgttgagatctcaagacaacgtttaagttcttcaattaatgaaagcgtaatgcaaaaa
tgcccacgttgtgagggtcatggttttatcaaaactacgcaagctacagcacttaccatc
ctacgtaaaatcagagcagaagccattaaagaagataccaacgaaattcgtgtccaagtt
cctgtagacatcgcagcatatatactaaatgaaaaaagagatagtattgttgagattgag
agaatttctcaagttaaggttatgattattcctaactttaatatggaatcgccaaagttt
caaatgcagagaatctggggtactagctacaaatcaaatcgtacaagctcagaattaata
gaagatgtttataatattgaaattcctaaagctggtaagaaaaaaattgcggctgtggat
ttaaatcaagctattgaaaatcaagctgctagcaacactcaagaacaaaagcctcaaact
gatgctcaagtagatatagttacacaaaatgataagaaacaagatgatgtaactcaacaa
gctaagaaaaaaggcttctttgctcggctttttagcggtatatttgcaactgattcaaaa
gctgctcagcaagctaataactcagctcaaaaacaacaaaacaaagaacagaatttccaa
aggcagcaacaacataataaggcgcaaaaagataataatcaacgtaatgagcgtaacaat
agcaacaacaaaaatgaacgcaataaaaatagaaacaataaaggagcaaaaccacaaata
gctcaagaaaataaaccacaaaaagacaatagccagcgtagtgatctcaatgctaatggt
aacagtaacaatgataaaaatgagcgcaataaaaataaatcaaactatgataagtttgat
aaaaaatcaaataaccgtaacagcagaagcaataatttaaatctaaataatgctgaagaa
gttattgatattacgcaacttaagtatcaaaatcaaacagctattgcaaagacagataat
atcaaaaaggtgatttcgaagaatcctgatgagtttatctctgtaatggttaaagatgtc
ttagaaaactatgatagtctaaaagacgatggtgctacaaagatagctacccaggagaaa
attaaaactaacaaatacttaaagtttgatactgtatctgtagatactgaaatagctcta
cttaatgaagtcgctaaatcaaatcaaactgttggagttgagcaaatcacagctgaaaca
gaagaatctttaagtatcgttgataaagttgatgacataacaataccagaagttgtagta
gagcaagaaaagccagcgaaagtagttaaagaaactaatcaaactagtgaagctaaacct
aaaaaagaaaagcaaactactacaaaaaataataagaaagaaaaaccagctgaaaaagag
atgaaacaaaatcaagctaaacctgaatatataaactattcaccagcgattgattttgaa
tctcaagcactaatatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (60)   

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