KEGG   Fusobacterium animalis 4_8: HMPREF0409_02038
Entry
HMPREF0409_02038  CDS       T02680                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
fus  Fusobacterium animalis 4_8
Pathway
fus03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:fus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HMPREF0409_02038
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fus03021]
    HMPREF0409_02038
   03400 DNA repair and recombination proteins [BR:fus03400]
    HMPREF0409_02038
Enzymes [BR:fus01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HMPREF0409_02038
Transcription machinery [BR:fus03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HMPREF0409_02038
DNA repair and recombination proteins [BR:fus03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HMPREF0409_02038
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid Apocytochr_F_C Biotin_lipoyl PTS_EIIA_1
Other DBs
NCBI-ProteinID: AGM24484
UniProt: R9RDS5
Position
complement(2164920..2168879)
AA seq 1319 aa
MGIRNFDKIRIKLASPEKILEWSHGEVTKPETINYRTLNPERDGLFCEVIFGPTKDWECS
CGKYKRMRYKGLVCEKCGVEVTRAKVRRERMGHITLASPVSHIWYSKGSPNKMSLIIGIS
SKELESVLYFARYIVTSSQESTVEVGKILTEKEYKLLKQLYGNKFEAYMGADGILKLLTA
VDLEKLRDELENELAEANSAQKRKKIVKRLKIVRDFIASGNRPEWMILTNVPVIPAELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEIKAPEIVVKNEKRMLQEAVDALIDNGR
RGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKK
MALELYKPFIMRELVRRELANNIKMAKKLVEESDDKVWAVIEDVIADHPVLLNRAPTLHR
LSIQAFQPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPNNII
SPSNGEPIAVPSQDMVMGCFYMTETRKGEKGEGKLFSNIGQVITAYQNNKVGTHALIKVR
MNGELIETTPGRVLFNEILPEIDRNYHKTYGKKEIKSLIKSLYEAHGFTETAELINRVKN
FGYHYSTFAGVSVGVEDLVIPPQKKDLLNKADKEVAQIEKDYKSGKIINEERYRKTIEVW
SRTTQAVTKAMMDNLDRFNPVYMMATSGARGNTNQMRQLAGMRGNMADTQGRTIEVPIKA
NFREGLTVLEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNEEDCHTHEGIE
VEALVGSDGKIIEELSERINGRVLAEDLVYKGKKIAKRNTMIHKDLLNKIEELGIKKVKI
RTPLTCALEKGVCKKCYGMDLSNYGEILLGEAVGVVAAQSIGEPGTQLTMRTFHTGGVAG
AATVVNSKKAENDGEVSFRDIKTIDINGEDVVVSQGGKIIIADNEHEVDSGSVIKVKEGQ
KVKEGDVLVTFDPYHIPIISSHDGKVQYRHFTPKNIRDEKYDVHEYLVVRSVDSVDSEPR
VHILDKKNEKLATYNIPYGAYMMVRDGAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELF
EARNPKGKATLSEIDGRIEILPTKKKQMRVVNVRSLENPEEFKEYLIPMGERLVVTDGLK
IKAGDKITEGAISPYDILSIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRK
VKIIDSGDSLFLEDEVIEKRLVDLENKKLEEQGKALIKYEPVIQGITKAAVNTGSFISAA
SFQETTKVLSNAAIEGKVDYLEGLKENVILGKKIPAGTGFNKYKTIEVRYNTDDKPEEE
NT seq 3960 nt   +upstreamnt  +downstreamnt
atgggaataagaaattttgataaaattagaataaaattagcatctcctgaaaaaatattg
gaatggtctcatggtgaagtaacaaaaccagagactataaattatagaacacttaatcct
gaaagagatggattattctgtgaagtaatatttggaccaacaaaggactgggaatgttct
tgtggaaaatacaagagaatgagatataaaggcttagtttgtgaaaaatgtggagttgaa
gtaacaagagctaaggtcagaagagaaagaatggggcatataactttagcttctcctgtt
tctcatatttggtattcaaagggaagtccaaataagatgtctttgattataggtatttca
tcaaaagaattggaatcagttctatattttgcaagatatatagtaacttctagtcaagaa
tcaactgttgaggttggaaaaatattgacagaaaaagaatataaattattaaaacaatta
tatggcaataagtttgaagcatatatgggggctgatggaattttaaaacttcttacagct
gttgatttagaaaaattaagagatgagttagaaaatgaattagcagaggctaattcagct
caaaaaagaaaaaaaattgtaaagagattaaaaatagttagagattttattgcttctgga
aatagacctgaatggatgatacttacaaatgttcctgtaattccagcagaacttagacct
atggttcaacttgatggaggaagatttgcaacatctgacttaaatgatttatacagaaga
gttattaatagaaataacagacttaaaaaactattagaaataaaagctccagaaattgtt
gtaaaaaatgaaaaaagaatgttacaagaagcagtagatgcacttattgataatggtaga
aggggtaaaccagtagttgctcaaaataatagagaattaaaatctttatctgatatgtta
aagggaaaacaaggaagatttagacaaaacttactaggaaaaagagttgactattcagca
agatcagttatagttgtaggaccatctttaaagatgaatcaatgtggtatccccaagaaa
atggctcttgaactatacaaaccatttataatgagagagttggtaagaagagaattagct
aataatataaaaatggctaaaaaattagttgaagaatctgatgataaagtttgggcagta
atagaagatgttatagcagatcaccctgtacttttaaacagagctcctacattacataga
ctatcaatacaagcattccaacctgtattgatagaagggaaggcaataagattgcatcct
cttgtttgttcagctttcaatgctgactttgatggagaccaaatggcagtacatttaact
ttatctcctgaatcaatgatggaagctaaacttttaatgtttgctcctaataatattatt
tcaccatctaatggagaacctattgctgttccatcacaagatatggtaatgggatgtttc
tatatgactgaaacaagaaaaggagaaaaaggagaaggaaagttattttctaatatagga
caagtgataactgcttatcaaaacaataaagttggaactcatgccttaataaaggttaga
atgaatggagaattaattgaaacaacacctggaagagttttatttaatgaaattttacca
gaaatagatagaaattatcataaaacttatggtaaaaaagaaataaaatccttaattaaa
tctttatatgaagcacatggttttactgaaacggcagaacttataaatagagttaaaaac
tttggatatcattacagtacatttgctggggtttcagtaggtgttgaagacttagtaatt
ccacctcaaaagaaagatttattaaacaaggcagataaagaagttgctcaaatagaaaaa
gattataaatctggaaaaataataaatgaagaaagatatagaaagacaatagaagtttgg
tcaagaacaactcaggcagttactaaggcaatgatggataatttggatagatttaatcca
gtttatatgatggcaacatcaggagccagaggtaatactaaccaaatgaggcagttagct
ggaatgagaggaaatatggcagatacacaaggtagaaccatagaagttcctattaaggca
aattttagagaaggattgacagtgttggaattctttatgtcttcacatggtgcaagaaaa
gggcttgctgatacagcattaagaactgccgattcaggatatttgacaagaagacttgtt
gatatttctcatgaagttatagttaatgaagaagattgtcatactcatgaaggaatagaa
gttgaagcacttgttggttctgatggtaagataattgaagaattaagtgaaagaattaat
ggtagagttttagcagaagaccttgtttataaaggaaagaagatagctaaaagaaatact
atgattcataaagatttattaaataaaattgaagaattaggaattaaaaaagtaaaaatt
agaactcctttaacttgtgcattagaaaaaggtgtttgtaaaaaatgttatggtatggat
ttatccaactatggagaaattttactaggagaagctgttggagtggttgctgctcaatca
ataggagaacctggtactcagcttacaatgagaactttccatacaggaggagttgcagga
gcggctactgttgtaaattctaaaaaggcagaaaatgatggagaagtttcattcagagat
attaaaactattgatatcaatggagaagatgtagttgttagccaaggtggaaaaattatt
atagcagacaatgaacatgaagtggattcaggttctgtaataaaagtaaaagaaggacaa
aaggtaaaagaaggagatgtacttgttacatttgacccttatcatatacctataatttct
tctcatgatggaaaagttcaatatagacattttactcctaaaaatatcagagatgaaaag
tatgatgtccatgaatatctagttgtaagatctgttgatagtgttgactcagaaccaaga
gtgcacatacttgataagaaaaatgaaaagttagctacttacaatattccttatggtgca
tatatgatggtaagagatggagccaaagttaaaaaaggtgatatcatagctaagattatt
aagttaggagaaggaactaaggatatcacaggaggtcttccaagggtacaagaactattt
gaagcaagaaatccaaaaggaaaggcaacactttctgaaatagatggaagaatagaaata
ttaccaactaagaaaaaacaaatgcgtgttgttaatgttagatcattggaaaatccagaa
gaatttaaagaatatttaattcctatgggggaacgtttagttgttactgatggtttgaag
ataaaagcaggagataagataacagaaggagctatttctccttatgatatattaagtatt
aaaggacttgtagcagctgaacaattcatacttgaatctgtacaacaagtttatagagat
caaggtgttacagttaatgataaacatatagaaattattgttaaacaaatgtttagaaag
gttaaaataattgattctggagattctttattccttgaagatgaagttatagaaaagaga
cttgtagatcttgaaaataagaaattggaagaacaaggaaaagcacttattaaatatgaa
ccagttatacaaggtatcacaaaagctgctgtaaatactggaagttttatatctgctgca
tctttccaagaaacaacaaaagttttatcaaatgctgctattgaaggtaaggttgactac
ttagaaggattgaaagaaaatgtaattttaggtaagaaaattccagcaggaacaggattt
aataagtataaaacaatagaagttagatacaatactgatgataaaccagaagaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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