KEGG   Fragaria vesca (woodland strawberry): 101296823
Entry
101296823         CDS       T02666                                 
Name
(RefSeq) sm-like protein LSM3B
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03018  RNA degradation
fve03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101296823
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101296823
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fve03019]
    101296823
   03041 Spliceosome [BR:fve03041]
    101296823
Messenger RNA biogenesis [BR:fve03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101296823
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101296823
Spliceosome [BR:fve03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    101296823
 Complex C
  U2 snRNP components
    101296823
SSDB
Motif
Pfam: LSM Glutaredoxin TIG_SUH
Other DBs
NCBI-GeneID: 101296823
NCBI-ProteinID: XP_004290522
Position
LG2:14404612..14407686
AA seq 97 aa
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSVE
IDDETYEEIVRTTKRTVPYLFVRGDGVILVSPPLRTA
NT seq 294 nt   +upstreamnt  +downstreamnt
atggcgagtgaggaagagagcgccgtgaaggagcctttggatctcatcaggctcagcctc
gacgagcgcatttacgtcaagctccgctctgaccgtgagctccgcggtaaactccatgct
tatgatcaacatttgaatatgattcttggtgacgtcgaagaaatcgttacttctgtggaa
attgacgatgaaacttacgaagagattgtccggactacaaagaggacagttccatatctg
tttgtcagaggggatggtgtcatccttgtttcccctccactaagaacagcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (33)   

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