KEGG   Fragaria vesca (woodland strawberry): 101299192
Entry
101299192         CDS       T02666                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03013  Nucleocytoplasmic transport
fve03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    101299192
   03015 mRNA surveillance pathway
    101299192
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fve03019]
    101299192
Enzymes [BR:fve01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     101299192
    5.6.2.5  RNA 5'-3' helicase
     101299192
Messenger RNA biogenesis [BR:fve03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     101299192
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     101299192
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD UvrD-helicase Helicase_RecD nSTAND3 PhoH ATPase AAA_16 SRP54 AAA_22 AAA_25 AAA AAA_32
Other DBs
NCBI-GeneID: 101299192
NCBI-ProteinID: XP_004300289
Position
LG5:22344332..22356069
AA seq 1277 aa
MESQPNNLFDTASQPDTATDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLSDPA
DRGGGGGGAGSDHQSDASPVSAAPGSATKARAGGSGSSGGNNSSNNQVVDALASGMSVLN
FEDTGDDDSYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNH
LVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNAL
KDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDASLED
LEKPGVDDEPQPVVIKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNK
KRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQG
VPADVNHGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEVQMVRNTLP
RRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC
APSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQ
QLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDES
TQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVSLGVKPIRL
QVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEIS
ASGTSYLNRTEAANVEKIVTTFLRSGIIPSQIGVITPYEGQRAYIVNYMSRNGALRQQLY
KEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKV
LSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKKIYNDRRLFVGGGPGVVPSDS
YGSIAPSGQSADRRSGRGRGSYLPPGPPNGTHKPGVHPAGYPMPRAPLAPFHGGPLSQPY
AIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGNAGTPIGSHLPHQQGTQQNVGNLGSNFNF
PALENPNSQPSVGGPLSQPGFVNNMPGQGPSQAFRDGFSMAGMSQEFLGDDFKSQGSHVP
YNVADFSTQASQSGYAVDYVTQGAQGGFPGNFMNQNSQAGYSRFGSGNDFMSQDYMAHGT
QGLFTQVGYNDPSQDDGSQNHYGVGNANALQSQGYMNSLYSQPFTHYNTQPMNLQAPQQQ
PPQQGQSSQNQKIHYNG
NT seq 3834 nt   +upstreamnt  +downstreamnt
atggaatcgcagccgaacaatctcttcgacacggcgtcgcagccggacacggccaccgac
gcctacaccttcctcgaattcaacacccaaggcgaggacttcgactaccccgagttccgc
gacccgattcggtccccggtcgcctggcccacgccgtccgattccctatccgaccccgcc
gaccgcggaggaggaggaggaggcgcgggctccgaccaccagtcggacgcgtcgccggtg
tcggcggctcctgggagcgccacgaaggcaagggcgggtggctccggcagtagcggcggg
aataatagtagtaataatcaggtggtggatgccctagcgtctgggatgagtgtgttgaac
tttgaggacactggggatgatgatagctatgaatttgggaaaggggatttcactgagcat
gcgtgccggtactgcggcgtctccaatccggcgtgtgttgtgaggtgtaatgtaccgtcg
tgccgcaagtggttttgtaattccagggggaatacctccggctctcatattgtgaatcac
ctggtgcgtgcaaaacacaaggaagtctgtcttcataaagatagtccgttaggagaaaca
atcctcgagtgctacaactgtggatgccgcaatgtattccttcttggatttatttcagcc
aagacagagagtgttgtcgttcttctttgtagggaaccctgcttaagtgttaatgcattg
aaggatatgaattgggacctgagccagtggtgtcccctgatagatgataggtgtttcttg
cagtggcttgttaaggtcccctctgaacaggagcagctgagggcacgccagattagtgct
caacaaataaacaaggtagaagaactctggaagtcaaatcctgatgcttccctcgaagat
cttgagaaacctggtgtggatgatgaaccccaacctgtggtcataaagtatgaagatgca
taccagtatcaaaatgtgtttgcaccacttatcaagcttgaagctgactatgataaaatg
atgaaagaatctcaaagcaaggacaatctcaccattaggtgggatatcggtcttaacaag
aagcgcgttgcttattttgtttttccaaaggaggacaatgagttgcgtcttgtacctggt
gacgagctgcggcttcgttattctggggatgcagctcatccagcatggcagtctgtggga
catgtgatcaagttaactgcacaagaggaagttgcactcgaacttcgtgctagtcaggga
gttccagccgatgttaaccatggcttcagtgttgattttgtgtggaagagtacaagtttt
gatcgtatgcagggagccatgaaagcttttgcagtggatgagacaagtgttagtgggtat
atttaccatcacctgttaggccatgaagtagaggttcaaatggtccgtaatacactacct
cgtcgttttggtgcacctggtctgccagagctcaatgcatctcaggtttttgctgtgaaa
agtgtcctccagaagcctataagtttgattcaaggtccacctggcacaggaaaaaccgtc
acttctgcagcaattgtgtatcacatggctaaacaagggcagggacaggttttggtttgt
gcacctagtaatgtggctgtggaccaactagctgaaaaaataagtgcaactgggctgaag
gttgttagactgtgtgcaaaatcaagggaagctgtcagctcaccggttgagcatttaacc
cttcactatcaggttcgtcatcttgacacatcagagaagagtgaacttcacaagttacag
caactgaaggatgagcaaggtgaattgtcaagtagtgatgagaaaaagtacaaagcgttg
aaacgggcaactgagagagagatttctcagagtgctgatgtcatttgttgcacatgtgtt
ggtgctggagatccacgattggcgaattttagattccgtcaggtacttattgatgagtct
actcaggcaacagagcctgaatgccttattcctttggtactcggggcaaagcaggttgtt
ctggttggtgatcactgccagcttggtccagtcattatgtgcaagaaagcagctcgtgct
gggcttgcccagtctctttttgaacgccttgtttcacttggtgtgaaaccaattaggttg
caggtccaatacagaatgcatccagcgctgtcagagtttccttctaacagcttctatgag
ggaacacttcaaaatggcgtcaccatcaatgaaaggcaatcaacgggaattgattttcca
tggccagttcccaatcgtccaatgttcttttatgttcagatgggtcaagaggagataagt
gctagtggaacatcttacctgaacagaactgaagctgctaatgttgagaagattgtcaca
acattcttaaggagtggtatcatccctagtcagattggggtgataacaccatatgaggga
cagcgagcatatattgtgaactatatgtcaagaaatggtgctctcagacagcaactgtat
aaggaaatagaggttgcaagtgtagattcatttcagggaagggaaaaagattatatcatc
ctttcatgtgtgaggagtaatgagcatcagggaattggatttcttaacgatcctcggagg
ctcaatgttgccctgacacgtgctcgatatggtattgttattctggggaatccaaaagtt
ctaagtaaacagcccttgtggaatagcttgttgacacactacaaggaacatgagtgcttg
gttgaaggtcctctaaataacttgaagcagagtatggttcaatttccaaagccaaaaaag
atctacaatgatcgtcgtctgttcgttggtggtggtcctggagttgtcccaagtgatagt
tatgggtctattgccccatccggtcagagtgctgatagaagaagtggtcgcggtaggggt
tcttacctacctcctggtccaccgaatggtacccacaagcctggtgtacatcctgctgga
tatccaatgcctagggcaccacttgcaccatttcatggtggtcccctttctcaaccctat
gctattccaactcgcggagctgtgcatggaccagtaggagctgttcctcatgtccctcaa
cctggaagccgagggtttggagctggacgtggcaatgctggtactcctattggcagtcat
ctcccacaccagcaaggcacacagcagaatgtaggaaatctgggatccaatttcaacttt
cctgctctggaaaatcctaatagtcagccatctgtgggcggtccattatctcaacctgga
tttgtcaataatatgccaggtcaagggccgagccaagcatttcgcgatggattttctatg
gcgggcatgtctcaggagttcttgggtgatgactttaaaagtcagggatcacatgttcct
tataatgttgctgacttctccactcaggcttctcagagtggatatgctgttgattatgtt
actcaaggagcacaaggagggtttcctggcaattttatgaaccagaattctcaagctggg
tactctcgatttggttcagggaatgacttcatgtctcaggactacatggcacatggtaca
caaggtctatttacccaggtgggctacaatgacccatcacaggatgatggatcgcagaac
cactatggcgtggggaatgcaaatgcgcttcagtctcagggatatatgaattctctctac
tcccagccttttacccattacaatacacagccaatgaacttgcaggctccacaacagcag
ccgccccagcagggtcagagctcccaaaatcagaagattcactacaatggttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (20)   
   Pfam (20)   
All databases (65)   

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