KEGG   Fragaria vesca (woodland strawberry): 101305407
Entry
101305407         CDS       T02666                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:3.6.4.13]
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101305407
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fve03041]
    101305407
Spliceosome [BR:fve03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    101305407
 Complex B
    101305407
 Complex C
   U2 SnRNP specific factors
    101305407
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 101305407
NCBI-ProteinID: XP_004288535
Position
LG1:20373229..20376798
AA seq 779 aa
MSKRKFGFEGFGINRQSTYNFEQSQQPPQRLYVPPSSRAHGHDNYEDTDLDNIDYDDVDA
AANKGGDGGEEEEVDPLDAFMEGIHEEVRSAPPPKPKEKADKYQDDDEEDHLESFLRAKK
DATLTLASDALHAGYDSDEEVYAAAKAVDAGLVEYDSDDNPVVVDRKRIEPISALDHSCI
DYEPFTKDFYEEKESISAMSEQDVAEYRKSLAIRVSGFDVPRPVKTFDDCGFSPQLMNAI
KKQEYEKPTPIQCQALPIVLSGRDIIAIAKTGSGKTAAFVLPMICHIMDQPELQKDEGPI
GVICAPTRELAQQIHLEAKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLI
DMIKMKALTMQRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVETL
AREILSDPVRVTVGEVGMANEDITQVVHVLPSDAEKLSWLLERLPGMIDDGDVLVFASKK
AGVDEIETQLSQKGFKAAAIHGDKDQATRVDIMNKFKSGTYHVLIATDVAARGLDIKSIK
SVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELVNSLVGAGQNVPVE
LMDLAMKDGRFRSKRDSRKGGGKKGKGRGGGRGGGSGGNSGRGVRGVDFGLGIGYNPESN
SSPSPAVTSRSAAVTSLRTGMMSQFKNKFVSATSNSPSQGSGNSLSAHANKRPALRGFVA
AGSIGGGIYAPQTTNTVSPPPASAVNISSQNSEENSSQKLTESSRDKPRERRRRSGWDC
NT seq 2340 nt   +upstreamnt  +downstreamnt
atgtcgaagcgaaagttcggattcgaagggttcggcataaaccggcaatcgacctacaac
ttcgagcagtcccagcaaccccctcagcgcctctacgtccctccctcctcccgcgcccac
ggccacgacaactacgaagacaccgaccttgacaacatcgattacgacgacgtcgacgcc
gccgcgaataaaggcggagacggcggtgaggaagaagaagtcgatccgctcgatgcgttc
atggaggggattcacgaggaggtgaggtcagctccgccgccgaagccgaaagagaaggcg
gacaagtaccaggacgacgacgaggaggatcatctggagagcttcttgagggcgaagaag
gacgccacgctgacgctggcctccgacgcgctccacgccggatatgattccgacgaggag
gtctacgccgctgccaaggctgtcgatgccggattggtggagtatgattcggatgacaat
cctgttgttgtcgataggaagaggatcgagccgatttcggctctggatcatagctgcatt
gactacgagcctttcactaaggatttctatgaggagaaagagtccatttcagcgatgagt
gagcaggatgttgccgagtaccgaaagagcttggccatccgagtgtctggctttgatgta
ccaaggccagtgaagacgtttgacgactgtgggttttctccgcaactcatgaatgcaatc
aaaaaacaagagtatgaaaagcctacaccaatacagtgccaagctttacccatagttctt
tcagggagggatatcattgctatagcgaaaactggttctggaaagactgctgcttttgtg
cttcccatgatttgccatattatggatcagccggaacttcagaaagatgaaggtcctata
ggagtaatatgtgcacctactagagaactggcgcagcaaatacacctagaggccaagaaa
tttgctaaatcacatggcatccgtgtctctgctgtttatggtgggatgtcgaaacttgat
cagttcaaagaactaaaggcaggatgtgagatagttgtagctactcctgggagattgata
gacatgattaaaatgaaggcactgacgatgcaaagggcaacttacctagtgcttgatgag
gctgatcggatgtttgaccttggttttgagcctcaaattaggtctatagttggtcagatt
aggccagaccgtcaaacgttactcttttctgctacaatgccccgaaaggttgaaacgttg
gctagggaaattctctctgaccctgtaagagttaccgtgggtgaggtgggaatggccaat
gaggacattactcaagttgttcatgtacttccttctgatgctgagaagttgtcatggctt
cttgaaagattaccgggtatgattgatgatggggatgtattagtatttgcttctaaaaag
gctggagtggatgagatcgaaacacagctttctcagaaaggttttaaagctgcagccatt
catggtgataaggaccaggctactagggtggatattatgaacaaatttaaatctggcacc
taccatgttctgattgcaactgatgttgctgctcgtggtcttgatatcaagtcaattaag
tcagtggtaaactttgatattgcaaaagacatggacatgcatgttcatcgtattggtaga
acaggtcgtgcaggtgataaagatgggactgcatacactcttatcacacataaagaggca
cggtttgctggagaattggttaatagcttagttggggctggtcagaatgttccagtggag
ctcatggaccttgcgatgaaggatggaagattcaggtctaaacgtgattcaagaaaagga
ggtggaaagaagggcaaagggagaggcggtggtagaggcggtggcagcggtggcaacagt
ggtcgaggtgtgcgtggggtggattttggtttgggtattggatataatccggaatccaac
agttctccatcacctgctgttaccagtcgatctgccgcagttacttctttaagaacagga
atgatgtctcagtttaagaataagtttgtttctgctacatcaaactctccaagtcagggt
tctggtaacagtttgagtgcgcatgccaacaagaggcctgcattacgaggatttgtagct
gctggttccattgggggaggcatatatgcgcctcagacaaccaatacagtttctccgcct
cctgcatcagcggtaaacatttcttctcagaactcggaagaaaattcgagccagaagttg
acggaaagttctagagacaaacctagagaaaggcggaggcgctctggttgggactgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (39)   

Download RDF
DBGET integrated database retrieval system