KEGG   Fragaria vesca (woodland strawberry): 101309408
Entry
101309408         CDS       T02666                                 
Name
(RefSeq) DNA-directed RNA polymerase I subunit rpa1
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    101309408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fve03021]
    101309408
Enzymes [BR:fve01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     101309408
Transcription machinery [BR:fve03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     101309408
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 DUF2635
Other DBs
NCBI-GeneID: 101309408
NCBI-ProteinID: XP_011469851
Position
LG7:complement(17198826..17215059)
AA seq 1674 aa
MASAQTLEVATESVTAVTFSFFTDEEARKQSVVKITKPDLVDELGTPVPGGLYDPAMGPL
DDRSDTLCKTCGQRSVNCRGHFGHIDVVLPVYNPLLFNVLYKLLQRTCLGCFHFRTSKEL
VEKCVSKLELVMKGDVVGAKRLDSDTPNEYSYLDEDGEGNNIDRDKHSKPERWTSLQFTE
AMSILEDSLETQQKCKNCKFKNPKITKPTFGWLQMTGAGNARENVIRGCKLVGPLSVQDE
GESCGDDVDAGISDISCASSLVTQDTATKSKGHESKELSEFSKLKIALSGDLKPTEVKGI
MRLLWTNEVPLCSFLSDIQCQGVERKGGYSMFFLETVLVPPIKFRPAAHSGDSVMEHPQT
VSLSKVVQTNTYLKDALSQNKQSQTIRRWRELQDCINLMFDSKTVSGQGKTDASGICQLL
EKKEGVFRQKMMGKRVNHACRSVISPDPYLAVNEIGIPPVFALTLTYPERVTPWNVFKLR
NAIVNGSEIHPGATHYIDKKSIKLPQKRRERILLSRKLPSSKGAGTQHGKGSDYENKMVL
RHLQDGDIVLVNRQPTLHKPSIMAHIVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHLP
QDEISRAEAYNLVNANNQYVKPTSGDPIRALIQDHVISAVLLTKKDTFLRSDEFNQLLYS
SSVSACGSDTFSGKPGQKVLTSNSEDEMQPLLPAIWKPVRLWTGKQVITTLLNHITSGSP
PLTVEKEAKLPCGFFNCKTLEEEEEFDKAQRAKEKKSRKVAFKDDSKGKEEPDESKLLIY
RNNLVRGVIDKNQFGDYGLVHNVQELYGSEAAGKLLSVFSRLYTVYLQMHGFTCGVDDLL
LIQSKDKKMKEQLESCEELGEIVFREFIGVRQNERKDPVILQSDIEEFLRNNGESVSEML
DRKMTSELNKKISKSDVFKQLFQKGLSKPSVKNYMYLMTSSGAKGGVANLQQIASYLGQQ
ELEGKRVPQMVSGKTLPCFPPWDWSPRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTA
VKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIIQFHYGEDGIDVHLTSFIKKFEKLA
NNKEMFDKRFGRQIDKLNPYIDELPPALKRKAEMSVPNLSLKEKNATLKLMEHKYLSSLA
QPGEPVGILAAQSVGEPSTQMTLNTFHNAGRSEMNVTLGIPRLQEILMTASNDIKTPVMT
CPLINEKTDYAKSLADRLKRITVADIIESMKVNITPFTHKDRQTCRIYELEMTLFVPEHL
SKFSEDWEELLVVKFVRALEDAIQNHLVLLSKISGIKDIKADSLPKVSMEADEDVSCKIS
QHGGEDDDDGDIDDSGEGAEDFGLDAQKRKRQGTDEMEYEGDCEDEVSEGHHSDRFESEI
DKGESDVEIDKDGVMGISDANDEMHESPSTGDTSKPQSKGKKTKSREKIKKKTRAKLVRK
EYDRATFVSAKGFHFEIHFKFTNEPHILLDQIARKTARNVYVKSSGNILDCKDIDIYGNE
DQVFCSWNDPRNKLPGEKNPTKEEKKMRAVQTAGVDFATLWKLQDDLDVNYIYSNNIHAM
LNTYGVEAARETIIKEISNVFKVYGISVNIRHLSLIADYMTHSGGYRPMNRFGGIAESTS
PINKMSFETASKFIREAAYHGETDDLETPSARICLGLPVKVGTGSFDLMQKMEI
NT seq 5025 nt   +upstreamnt  +downstreamnt
atggcctcagctcaaaccttagaggttgcgacggagtcggtgacggcagtcacgttcagc
ttcttcaccgacgaagaggcgcggaagcagagcgttgtgaagattacaaaaccggatttg
gttgacgaattagggacgccggtgccaggtgggctttacgaccctgcgatgggccctctc
gacgacagaagcgacacgctttgcaagacatgtggtcagaggtcggtcaattgccggggt
cattttggtcacattgacgttgttttgcccgtctataatcccttgctgttcaacgttctt
tacaaacttctacaaagaacctgtctcggatgtttccattttcgaacaagcaaagagctg
gttgaaaaatgtgtatccaaattggaactggtgatgaaaggtgatgttgttggtgcaaaa
agattagactctgacacgcctaatgaatactcatatcttgacgaggacggggaaggaaat
aatattgacagagacaagcattcaaagccggaaagatggacttctcttcagttcacagaa
gcaatgtctattttggaagattctttggagacacaacaaaagtgcaagaactgcaaattt
aagaatcctaaaatcactaaaccgacttttggttggttacagatgactggtgcgggcaat
gctagagaaaatgttatcagaggatgcaagctggtaggacctttaagtgttcaagacgag
ggtgaatcttgtggtgatgatgttgatgcaggcatatctgatatatcttgtgcatcctct
cttgtgactcaagatactgcaacgaagagtaaaggacatgagagcaaagaactcagtgag
ttctctaagctgaaaatagctttatccggagatctaaaaccaaccgaggttaaaggaata
atgaggcttttgtggacaaatgaggttccactgtgctcttttcttagtgacatccaatgc
caaggggttgaaagaaagggaggttactctatgtttttcttagagactgttcttgtacca
ccaatcaaatttcgtcctgcagcccatagtggtgattctgtgatggagcatcctcaaact
gtttcattgagtaaggtggttcagacaaatacttacttgaaagacgctcttagtcagaac
aaacaatcacagacaattcggcgttggagggaacttcaagattgtataaatctaatgttc
gatagcaaaactgtttcgggtcaaggtaaaacagatgcttctggaatatgtcagttgctg
gagaagaaggaaggcgtgttccgccagaaaatgatgggaaagagggttaatcatgcatgc
cggtcggttatatcccctgacccctatttagctgttaatgagattggaattcctccagtc
tttgcattgacattaacatatcctgagagagttactccctggaatgttttcaagttaagg
aatgctattgtcaatggttctgaaatccatcctggagctacacactatattgataaaaaa
tctatcaagttgccacaaaagcggagagagcgcattttattgtcaagaaagttaccttct
tcaaaaggggcagggacacaacatgggaagggatctgactatgaaaacaaaatggtactc
cgtcacttgcaagatggagacattgttcttgttaatcgccagcctacacttcacaaaccc
agtataatggctcacatagttcgtgtattgaagggggagaaaacattacgcatgcactat
gcaaattgcagtacatacaatgctgattttgatggtgatgaaatgaatgttcatttgcca
caagatgaaatttctcgcgctgaagcttacaatttggtgaacgcaaataatcaatacgta
aagcccactagtggtgatcccattcgagccttaattcaggaccatgttataagtgctgtc
ctccttacaaaaaaggacacctttctccgctcggatgaatttaatcagcttctttatagt
tcatctgtttcagcatgtggttcagacactttctctggcaagccaggtcaaaaggtttta
acatccaactctgaagatgaaatgcagccccttcttcctgcaatttggaaaccagtgcgt
ctgtggacgggaaagcaggtcatcactaccttgctaaatcatattacaagtggttctcca
ccacttactgttgaaaaggaagcaaaactcccatgtgggtttttcaactgcaagactctt
gaagaagaagaggaatttgataaagctcaacgagcaaaagaaaagaagtcaagaaaagta
gcttttaaagatgattcaaaaggaaaggaggagccagatgagagcaagttgttaatctat
cgaaataacttggtgcgtggtgtgatcgacaaaaaccagtttggtgactatggtttggtc
cataatgtgcaggaactctatggttcggaagctgcaggaaaattgctttctgtttttagt
cgtttatatactgtttatttacagatgcatgggttcacttgtggggttgacgatcttttg
ctaatacaaagcaaagacaaaaaaatgaaggaacaactcgaaagttgtgaagagcttggt
gaaatagttttccgtgagtttattggggtcagacaaaatgaaagaaaagatccagtgata
ttgcaatcggatattgaagaatttttacgcaataatggagaatctgtgtcggaaatgttg
gacaggaaaatgacgagtgaacttaataaaaaaatctccaaatctgatgtcttcaaacaa
ttgtttcagaaagggttatcaaaaccatctgttaagaattatatgtatcttatgacaagc
tctggggctaaaggtggtgtggcaaatctccaacaaattgcttcatacttgggtcagcaa
gagctagaaggtaaacgagtcccccaaatggtttctggaaagaccttaccatgcttccct
ccatgggattggtcacctcgagctggaggttttattattgatcgctttcttaccggtctt
catcctcaggagtattattttcactgcatggctggccgtgaagggctggttgatacagct
gtcaaaacttctcgaagtggatacttgcaaagatgcctaataaaaaatctcgaatgcctt
aagatttcttatgatcatactgtccgtgatgctgatggttcaattattcaattccattat
ggggaggatggtattgatgtccatttgacaagctttattaagaagtttgaaaaactggca
aataataaagaaatgtttgacaagagatttggtcgtcaaattgataaactcaatccctat
attgatgagttgcctcccgctctcaaaagaaaagcagagatgtcagttcctaatttgtct
ttgaaggagaaaaatgccaccttgaagttaatggagcacaaatatctcagcagtcttgcg
caacctggtgaaccagttggtattcttgctgctcagtccgtaggagaaccatcaacacaa
atgactctgaataccttccataatgctggacgaagtgaaatgaatgtgactctcggaatt
ccacggctccaagagatcttgatgactgcttcaaatgatatcaagactccagtcatgaca
tgtccgttgataaacgagaaaacggactatgctaaaagtttagctgatagattgaagagg
atcactgtggcagacataatagagagcatgaaagtaaacattacaccatttacacataag
gaccgtcaaacttgccgtatttatgagcttgagatgacactttttgtaccagaacatctt
tcaaaattttcagaagattgggaggaactcctagtggttaaatttgtcagggctttggag
gatgccatacagaatcatctggttttgctctctaaaattagtggtataaaagatataaag
gctgattcactgccgaaggtatcaatggaggcagatgaagatgtctcttgtaaaatttcg
cagcatgggggagaagatgatgatgatggcgatatagatgacagtggtgaaggtgctgag
gattttgggttggatgcacaaaaacgaaagcggcagggtacagatgagatggagtatgaa
ggtgactgtgaggatgaagtgagtgaaggtcatcattctgatagatttgaaagcgaaatt
gataagggggaaagtgatgtggaaatcgataaggatggtgtgatggggatctcagatgca
aatgatgaaatgcatgaaagtccctcaactggagatacatctaagccacaatcgaaggga
aaaaagaccaaatcaagggagaaaataaaaaagaagacccgagcaaagctagtaagaaag
gagtatgacagggcaacttttgtgtcagccaaggggtttcactttgagatccattttaaa
tttaccaatgaacctcatattcttttggatcagattgctcggaagacagcccgaaatgta
tatgtcaaaagctctggcaatattttggattgtaaagatattgatatttatggtaatgaa
gatcaagttttctgctcctggaatgatcccagaaataaattaccgggtgaaaagaatccc
acaaaagaagaaaagaagatgcgagccgtgcagacagcaggcgtggattttgctacacta
tggaaactgcaagatgatcttgatgtcaactatatatattccaacaacattcatgctatg
cttaacacttatggagtggaagccgccagagaaactatcatcaaagaaataagcaacgtt
ttcaaggtttatgggatatctgtcaatatcagacacctttcactcatagctgattacatg
actcatagtggtgggtatcgtccaatgaacagatttggaggtatagcagagtctacatcg
ccaatcaataaaatgtcatttgagacggcttccaagttcattcgagaagcagcatatcat
ggggagactgatgacctggaaaccccatctgctaggatctgtcttgggctgcctgtgaaa
gttggtacgggttcttttgatttgatgcaaaagatggaaatttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (40)   

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