KEGG   Fragaria vesca (woodland strawberry): 101310702
Entry
101310702         CDS       T02666                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13]
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101310702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fve03041]
    101310702
   03009 Ribosome biogenesis [BR:fve03009]
    101310702
Spliceosome [BR:fve03041]
 Complex A
  U1 snRNP components
   U1 related factors
    101310702
 Complex B
    101310702
Ribosome biogenesis [BR:fve03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    101310702
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 101310702
NCBI-ProteinID: XP_004299135
Position
LG5:complement(5677912..5681843)
AA seq 606 aa
MYAYDNRYADANSYRERRSDLMGPAPAAAAPPVYGRGGGVAPYRGPAPSYGGGAAGPVGD
RNGYPPFQPPAGRFSIGRDGGGSFGGRGRGGGGRGFDGGRGGRSSGYSRGGGSSGFGGGR
GGGRHGGGSSRGDLDGIVLPKQDFGDLVPFEKNFYVESPSVKAMSEHEVVAYRGRREITV
EGHDVPKPIQTFRDASFPGYCLDAIAKLGFVEPTPIQAQGWPMALKGRDLVGIAETGSGK
TLSYLLPALVHISAQPRLDSGDGPIALVLAPTRELAVQIQQEAVKFCSQNYIKSTCIYGG
APKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRK
IVSQTRPDRQTLYWSATWPREVESLARQFLRNPYKVIIGSASLKANQSIKQVVEVVTEFE
KYNRLLKLLKDSIVGSRILIFVETKKGCDHVTKQLRMDGWPALSIHGDKNQAERDWVLSE
FKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGATGTALTFFT
ESNGKFARELIKILQEAGQVVSPALSAMARSSGSNYGGGNFRSRGRGGFGNRSGSNNVPV
GYKRPW
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgtacgcctacgacaaccgttacgccgacgctaactcctaccgcgagcgccgaagtgac
ctaatgggtccagcgcctgcggcggcggcgccaccggtctacggccgtggcggtggggtg
gccccgtacaggggcccagcgccttcgtacggaggaggcgcggctggaccggtaggagat
aggaatggataccctcctttccagcccccggcggggcggttcagcatcggccgagacggc
ggtggtagttttggcgggagaggccgtggtggcggcggtaggggtttcgatggaggccgt
gggggtaggagctctggttatagtcggggaggagggagttcaggtttcggtggtggcaga
ggaggtggtagacatggtggtggttcatcgagaggagatttggatggtattgttcttcct
aagcaggatttcggggatctggttccttttgagaagaatttctatgttgaaagcccctcg
gtgaaggcaatgtcagagcatgaggttgtggcttatcgaggcaggagggagattactgtt
gaagggcatgatgtccccaagccgattcagacgtttcgggatgcaagtttccctggttac
tgtcttgacgcgatagctaagttgggttttgttgaaccaacaccaatccaggctcaagga
tggcctatggcactaaagggtagagatttagttggaattgctgagactggttccggaaaa
accctttcatatctgctgccagctctggtgcatattagtgctcagcctcgattagattca
ggtgacggccctattgctttagtattagcacctactcgggaattggcagttcaaattcaa
caagaagctgtaaaattttgttcacaaaattatattaagagtacatgcatttatggtggt
gctccaaaaggaccccaaatacgtgatctcagaagaggggttgagattgttatagctaca
cctggccgactaatagatatgttggaagctcagcacacaaatttgcgaagagtgacttac
ctagttttggatgaggctgatcggatgttggacatgggatttgagccgcagataaggaaa
attgtatcccaaacccgaccagatcggcagacattgtattggagtgctacatggccaagg
gaggttgaatctttagcaaggcagtttttacgtaacccctataaggtaatcattggatca
gcaagtttgaaagcaaaccaatccataaagcaagttgttgaagttgtgaccgagttcgag
aaatataataggctgctaaaattgctaaaagactcaatcgtcgggagccgaattctgata
tttgtggagacgaaaaagggttgtgaccatgttactaagcaattgagaatggatggatgg
ccagctctgtccattcatggtgataaaaaccaggctgaaagagactgggtcttgtctgag
tttaaaagtggcagatctcctataatgactgccactgatgtggctgcacgtggtcttgat
gtgaaggacataaaatgcgtgatcaattatgattttccatcaagccttgaggattatgtc
cacaggattggacggacgggacgtgcaggggcaacaggaactgctttaacctttttcaca
gagtcgaatggtaaattcgcaagggaattgatcaagatcctgcaggaagcaggtcaggtt
gtgagtccggcattgtctgccatggcacgatcatctggttctaactatggaggggggaat
ttccgttcgagagggcggggaggctttggtaatcggtctggttcaaataatgttcctgtt
ggttacaagagaccttggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (45)   

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