KEGG   Geoglobus acetivorans: GACE_0027
Entry
GACE_0027         CDS       T03507                                 
Name
(GenBank) putative exosome complex RNA-binding protein 1
  KO
K03679  exosome complex component RRP4
Organism
gac  Geoglobus acetivorans
Pathway
gac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GACE_0027
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gac03019]
    GACE_0027
Messenger RNA biogenesis [BR:gac03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     GACE_0027
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     GACE_0027
SSDB
Motif
Pfam: RRP4_S1 RRP40_S1 ECR1_N S1 KH_1 KH_6 KH_2 PCB_OB Spt6_S1
Other DBs
NCBI-ProteinID: AIY89090
UniProt: A0A0A7GAL2
Position
23528..24202
AA seq 224 aa
MTRPIVLPGELLASNPKVAGAGTYVDKGKVYAKFLGLLDKSETSVRVIPLKGRYIPSVGD
VVIGIVREVTSNGWAVDINSPYQGFLPAAENPEMRPNRKPNDILEIGDIIIAKVVNIDPK
MKVTLTMKDRMCRAVRFGRIVPINPARVPRVIGKGGSMIKLFKTELGVQIIVGKNGLIWI
SGDRRKVNIVEEAIYIIESEAHTEGLTDRITEFVKRRKGELNGQ
NT seq 675 nt   +upstreamnt  +downstreamnt
atgacaaggcctatagtgttgcccggagaactgctcgcatcaaatccaaaggttgcggga
gccggcacgtatgttgataaagggaaggtttatgcaaaattcctgggattgcttgataaa
tcggaaacgtctgtaagggtaatccctctgaaaggcaggtacatcccatctgtgggggat
gtcgttattggtattgtcagggaggttacgtccaacggatgggcggtggatataaattcg
ccctaccaggggtttttacccgctgcagaaaaccccgagatgagaccaaacagaaaaccg
aacgatatccttgagataggtgatataataattgccaaggtcgtcaatatcgatcctaaa
atgaaggttacgctcacgatgaaggatagaatgtgcagggcggtcaggtttgggaggata
gttccaataaaccctgcaagagtgccaagagtcatcggaaaaggaggtagcatgattaag
ctctttaaaaccgaacttggagttcagattatcgttggcaagaacggactcatctggata
agcggtgacaggaggaaggtaaatattgtggaagaggcaatatatattatcgagtctgaa
gcccatactgaggggcttacagataggattacggagtttgttaagaggaggaaaggtgaa
ttaaatggtcagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (21)   

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