KEGG   Gemmatirosa kalamazoonensis: J421_1706
Entry
J421_1706         CDS       T03025                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
gba  Gemmatirosa kalamazoonensis
Pathway
gba03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gba00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J421_1706
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gba03019]
    J421_1706
   03009 Ribosome biogenesis [BR:gba03009]
    J421_1706
Messenger RNA biogenesis [BR:gba03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     J421_1706
Ribosome biogenesis [BR:gba03009]
 Prokaryotic type
  rRNA helicases
   J421_1706
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22
Other DBs
NCBI-ProteinID: AHG89243
UniProt: W0RIM5
Position
1945864..1947705
AA seq 613 aa
MSAPTSPELLDTVPPDDGGFAALGLRPELLTAVTALGYEEPTPIQRAAIPVLLEGRDVLG
LAATGTGKTAAFALPLLDRVAGARNRDGSPAALVLVPTRELAMQVAEAVHKYGRPLGIQV
VPIYGGAPMGRQLSALERGVDVVVATPGRALDHLGRGTLRLDSVRVVVLDEADEMLDMGF
EDELRAILEATPTERQTALFSATMAPQVARIAGAHLRDPARVEIAREPMAAGTVPRVRQT
AYVVPRAHKLATLGRVLDIEAPTSAIVFCRTRTEVDELTETLAGRGWSAEALHGGMGQEA
RDRVMRRFRGGQLELLVATDVAARGLDVEHVSHVVNYDVPSAPEAYVHRIGRTGRAGREG
AAVTIAEPREHRLLRNIERLTGQKIEFAVVPTVADLRARRLDLTRAAVQDALVEAQTNAA
RLDRFRIVVETLANEFDLMDVAAAAVSVAHEATAGDAEEDDVEIPTVTVGEYRGGSRTAG
RFGRFERNERPRRESWRDEGGREGARESAREGGREGGREGGREGAPPDSNVAPARRASGT
PTTRGGTRERVATAAPATRRASTSAPGGRRGSARRISSARSRTRRGCTRAPSGPSRSPTG
SRSSRSPNRRWRR
NT seq 1842 nt   +upstreamnt  +downstreamnt
atgtccgcaccgacttcccccgaactcctcgacaccgtaccgcccgacgacggcggcttc
gcggcgctcggcctgcgccccgagctgctcaccgcggtcaccgcgctcggctacgaggag
cccacgcccatccagcgcgcggcgatccccgtgctgctcgaggggcgcgacgtcctcggg
ctcgccgcgaccggcacgggcaagacggccgcgttcgcgctgccgctgctcgaccgcgtc
gcgggcgcgcggaaccgcgacgggtcgccggccgcgctcgtcctcgtgccgacgcgcgag
ctcgcgatgcaggtggcggaagcggtgcacaagtacggccgaccgttaggcatccaggtc
gtgcccatctacggcggcgcgccgatgggacggcagctctccgcgctcgagcgcggcgtc
gacgtcgtcgtcgccacaccggggcgcgcgctcgaccacctcgggcgcggcacgctgcgg
ctcgactcggtgcgcgtcgtggtgctcgacgaggccgacgagatgctcgacatggggttc
gaggacgagctgcgcgcgatcctcgaggcgacgccgaccgagcggcagaccgcgctgttc
tcggccaccatggcgccgcaggtcgcgcgcatcgccggcgcgcatctgcgcgatcccgcg
cgcgtcgagatcgcgcgcgagccgatggccgccggcaccgtgccgcgcgttaggcagacg
gcgtacgtcgtgccgcgcgcgcacaagctcgcgacgctcggccgcgtgctcgacatcgag
gcgccgacgagcgcgatcgtgttctgccgcacgcgcacggaagtcgacgagctcaccgag
acgcttgccggccgcggctggagcgccgaagcgctgcacggcggcatggggcaggaggcg
cgcgatcgcgtcatgcggcgcttccgcggcggccagctcgagctgctcgtcgccaccgac
gtcgccgcgcgcggcctcgacgtcgagcacgtgtcgcacgtcgtgaactacgacgtgccg
agcgcgcccgaggcgtacgtgcaccgcatcggccgcaccgggcgggcgggccgcgagggc
gcggcggtgaccatcgccgagccgcgcgagcatcggctgctgcgcaacatcgagcggctg
accggacagaagatcgagttcgccgtcgtgcccacggtcgccgacctgcgcgcgcgccgc
ctcgatctcacgcgcgcggcggtgcaggacgcgctcgtggaggcacagacgaacgcggcg
cggctcgaccgcttccgcatcgtcgtggagacgctcgcgaacgagttcgatctcatggac
gtcgccgccgcggcggtgagcgtcgcgcacgaggcgaccgccggcgacgccgaggaggac
gacgtcgagatcccgacggtgaccgtgggcgagtaccgcggtggctcgcgcacggcggga
cgcttcggccgcttcgagcggaacgagcgcccgcgccgcgagagctggcgcgacgagggg
ggccgcgaaggcgcgcgcgagagtgcgcgcgagggcgggcgcgagggcggccgcgagggc
ggccgcgagggggccccccccgacagcaacgtcgcgccggcccgtcgagcgagcggtacc
ccgacgacgcggggcgggacgcgcgaacgcgtcgcgaccgcggcaccggcgacacgacgc
gcatctacgtcggcgccgggcggaaggcggggatccgcccggcggatctcgtcggcgcga
tcgcgaacgaggcggggctgcacgcgcgcgccatcggggccatcgagatcgccgaccggt
tctcgctcgtcgaggtccccgaatcggcggtggaggcggtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (96)   
   KEGG ORTHOLOGY (1)   
   RefGene (93)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (107)   

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