KEGG   Gemmatirosa kalamazoonensis: J421_2714
Entry
J421_2714         CDS       T03025                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
gba  Gemmatirosa kalamazoonensis
Pathway
gba03030  DNA replication
gba03410  Base excision repair
gba03420  Nucleotide excision repair
gba03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gba00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    J421_2714
   03410 Base excision repair
    J421_2714
   03420 Nucleotide excision repair
    J421_2714
   03430 Mismatch repair
    J421_2714
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gba03032]
    J421_2714
   03400 DNA repair and recombination proteins [BR:gba03400]
    J421_2714
Enzymes [BR:gba01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     J421_2714
DNA replication proteins [BR:gba03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     J421_2714
DNA repair and recombination proteins [BR:gba03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     J421_2714
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     J421_2714
   MMR (mismatch excision repair)
    DNA ligase
     J421_2714
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      J421_2714
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT DNA_ligase_ZBD HHH BRCT_2 UPF0758_N DUF3701 Trm112p zf-ribbon_3
Other DBs
NCBI-ProteinID: AHG90251
UniProt: W0RHL1
Position
complement(3166556..3168610)
AA seq 684 aa
MPTRNEEEELAALAARAGTLREQIEQASYEYYVLDRPTLSDAEYDRLFRELQTLEREHPE
LRTEDSPTLRVGAEPQSVLPKHTHLVPMLSLGNAFSDEELAEWEERIVRLAGDEVRHAGY
TAELKIDGAAVSLTYRDGVLATGATRGNGTVGEDVTPNLRTIREIPLRLRGKVPAGVLEI
RGEVYMTYTGFEKMNAERVAAGEPVFANPRNSAAGALRQLDPKMTAKRPLRFFGYAVAVP
EGARALPFASQWELLETLASWGIPVAPHRRRCVTLDDVHAWAHDVEQVQRATLDFAIDGA
VVKVDSLALQGELGDVGREPRWAIARKFAPDIAETTLLDIKVNVGRTGSVNPYAELEAVE
IGGATVRLATLHNFELIREKDLRPGDRVQVKRAGEVIPQVIGPVPDKRDATHPPAPYEPP
THCPACGTPLEPGEDRGMLYCRNFHCPARQLEGLVHFASRGAMDIRGLSYARIQQLLEAG
LVHDAADLYDLTVEQLVALERFAEKSAENLVQALAESRAQPLSRLLFGLGIDFVGEVAAR
LLARHFGTMDRLLNASVDDVLEVRGVGETMARSVVDWFADPEARQLVARLAERGLTMHEP
SAAAGTALKGCTVVITGTLPTLTREQATELVEAHGGRVTSSVSRKTSFLLAGADAGSKLT
KATEYGVEIIDEAELLRRVEAGSE
NT seq 2055 nt   +upstreamnt  +downstreamnt
atgccgacccggaacgaggaggaggaactcgccgcgctggccgcgcgcgcgggcacgttg
cgcgagcagatcgagcaggcgtcgtacgagtactacgtgctcgatcggcccacgctctcc
gacgccgagtacgaccggctgttccgcgagctgcagacgctcgagcgcgagcacccggag
ctgcgcaccgaggactcgccgacgctgcgcgtgggcgccgagccgcagtccgtgctcccg
aagcacacgcacctcgtgccgatgctgtcgctcggcaacgcgttcagcgacgaggagctc
gcggagtgggaggagcgcatcgtgcgactcgccggcgacgaggtgcgacacgccggctac
acggcggagctgaagatcgacggcgcggcggtgagcctcacgtatcgcgacggggtgctg
gcgaccggcgcgacgcgcggcaacggcaccgtgggcgaggacgtcacgccgaacctgcgc
acgatccgcgagatcccgctgcggctgcgcggcaaggtgccggccggcgtgctcgagatc
cgcggcgaggtgtacatgacgtacaccggcttcgagaagatgaacgccgagcgcgtggcg
gccggcgagccggtgttcgcgaacccgcgcaactccgccgccggggcgctgcgtcagctc
gacccgaagatgacggcgaagcgtccgctccgcttcttcggctacgcggtggcggtgccg
gagggcgcgcgcgcgctgccgttcgcgtcgcagtgggagctgctggagacgctcgcgtcg
tggggcattcccgtggcgccgcaccgccgccgctgcgtcacgctcgacgacgtgcacgcg
tgggcgcacgacgtggagcaggtgcagcgcgcgacgctcgacttcgcgatcgacggcgcg
gtggtgaaggtcgactcgctcgcgctgcagggcgagctcggcgacgtggggcgcgagccg
cggtgggccatcgcgcgcaagttcgcgcccgacatcgcggagacgacgctgctcgacatc
aaggtcaacgtcggccgcacgggcagcgtgaacccgtacgcggagctggaggcggtggag
atcggcggcgcgaccgttaggctcgcgacgctgcacaacttcgagctgattcgcgagaag
gacttgcgccccggggaccgcgtgcaggtgaagcgcgccggcgaggtgatcccgcaggtc
atcgggccggtgccggacaagcgcgacgcgacgcatccgccggcgccgtacgagccgccg
acgcactgccccgcgtgcggcacgccgctcgagcccggggaggaccgcggcatgctctac
tgccgcaacttccactgccccgcgcggcagctcgaggggctcgtgcacttcgcgtcgcgc
ggcgcgatggacatccgcggcctgtcgtacgcacgcatccagcagctgctcgaggcgggg
ctcgtgcacgacgcggcggacctgtacgacctcacggtggagcagctcgtggcgctcgag
cggttcgccgagaagagcgcggagaacctcgtgcaggcgctcgccgagtcgcgcgcgcag
ccgctgtcgcgcctcctgttcgggttaggcatcgacttcgtgggcgaggtggcggcgcga
ctgctcgcgcggcacttcggcaccatggaccggctcctgaacgcgtccgtggacgacgtg
ctcgaggtgcgcggcgtcggcgagacgatggcgcgctcggtggtggactggttcgcggac
ccggaggcgcgacagctcgtcgcgcggctcgccgagcgcggactcacgatgcacgagccg
tcggccgcggcggggacggcgctgaagggctgcaccgtcgtcatcaccggcacgctgccg
acgctgacgcgcgagcaggcgacggagctcgtggaggcgcacggtggacgcgtgacgagc
tccgtgtcgcgcaagacgagcttcctgctcgccggcgccgacgcgggcagcaagctcacg
aaggccacggagtacggcgtggagatcatcgacgaggcggagctgctgcgccgcgtggag
gcgggatccgaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (44)   

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