KEGG   Geobacter bemidjiensis: Gbem_0409Help
Entry
Gbem_0409         CDS       T00749                                 

Gene name
hemD
Definition
(GenBank) uroporphyrinogen III C2,C7-methyltransferase and uroporphyrinogen III synthase
  KO
K13542  uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
Organism
gbm  Geobacter bemidjiensis
Pathway
gbm00860  Porphyrin and chlorophyll metabolism
gbm01100  Metabolic pathways
gbm01110  Biosynthesis of secondary metabolites
gbm01120  Microbial metabolism in diverse environments
Module
gbm_M00846  Siroheme biosynthesis, glutamate => siroheme
Brite
KEGG Orthology (KO) [BR:gbm00001]
 Metabolism
  Metabolism of cofactors and vitamins
   00860 Porphyrin and chlorophyll metabolism
    Gbem_0409 (hemD)
Enzymes [BR:gbm01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.107  uroporphyrinogen-III C-methyltransferase
     Gbem_0409 (hemD)
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.1  Hydro-lyases
    4.2.1.75  uroporphyrinogen-III synthase
     Gbem_0409 (hemD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: HEM4 TP_methylase
Motif
Other DBs
NCBI-ProteinID: ACH37438
JGI: Gbem0409
UniProt: B5EBG9
Position
485161..486705
Genome map
AA seq 514 aa AA seqDB search
MSADMKNGYVYLIGAGPGDPGLITVKGRDCLTKAQVVMYDYLANEELLRLAPKGAELIYA
GKVGGEHNREQSQINELLVQKALSGKIVARLKGGDSFIFGRGGEECEALVEAGIPFEIVP
GITAAVGATSYAGIPLTHRGVTTSVAFVTGHEKKGKASSEIDWEGLSLGSGTVVFYMGVT
NLPHIACSMMEHGRAPQTPVALIRWGTRPEQEVLVGTLANIAEKAKAAEFKAPAITVVGE
VVNLRETLRWFDNRPLFGRSVLVTRGADQAGGFTSKLEQLGARAYCCPTIEITPPTDHSA
LDEAIEGLDSFNWIIFTSYNAVKYFFARLSEHNLDTRALGRCRVCAVGPKTAAALAQYGI
RADLIPSDYKAEGVIEIFSEMDMAGQWVLFPKGDRAREVITEELGRMGAQVIAPVAYANH
TPDDIPAEALAALEDGRIDCATFTSSSTVQNLAAILGENRFLHLMQGVKVASIGPITSKT
CRDLGLEVHMEPAEYTLDALAAEMIEYFRAGELR
NT seq 1545 nt NT seq  +upstreamnt  +downstreamnt
atgagcgctgatatgaagaacggatatgtctatctgatcggtgcgggtcctggagacccg
ggcctgatcacggtgaaagggcgcgattgcctgaccaaggcccaggtggtgatgtacgac
tacctggccaacgaggaactgctgcgcctcgccccgaagggggcggagctcatctacgcc
ggcaaggtcggcggcgagcacaaccgggagcagagccagatcaacgaactactggtacag
aaggcgctctcgggcaagatcgtggcgagactcaaggggggcgattccttcatcttcggg
cgcggcggcgaagaatgcgaggcgctggtcgaggccggcatccccttcgagatcgtcccc
ggcatcaccgctgcagtcggcgccaccagctatgccggtatcccccttacccatcgcggc
gtgaccacctccgtcgccttcgtcaccgggcacgagaagaaagggaaggccagttccgaa
atcgattgggaaggtctctctctgggaagcggcaccgtcgtcttctacatgggcgtcacc
aacctgccgcacatagcctgcagcatgatggagcacggccgcgcgccgcagaccccggtg
gcgctgatccgctggggcacccgccccgagcaggaagtgctggtcggaacgctggcgaac
atcgcagaaaaggcgaaggccgccgagttcaaggcgcccgccatcaccgtagtcggcgaa
gtggtcaacctcagggaaaccctgcgctggttcgacaaccgcccgctcttcgggcgctcg
gtcctggtgacccgcggcgccgaccaggcgggcgggttcacctccaagctggagcagctc
ggcgccagggcttactgctgcccgaccatcgaaatcaccccgcccaccgatcattccgca
ctcgacgaggcgatcgaggggctggacagcttcaactggatcatcttcacctcgtacaac
gccgtgaagtacttcttcgccagactctccgagcacaacctcgacacccgtgccctcggc
cgctgccgcgtctgcgccgtcggtcccaagaccgccgcggcgctggctcaatacggcatt
cgggccgatctgatcccttccgattacaaggccgagggggtcatcgaaatcttttccgag
atggacatggcaggacaatgggtgcttttccccaaaggcgaccgtgcccgcgaagtcatc
accgaggagttggggcggatgggagcccaggtcatcgcacctgtcgcctatgcgaaccac
acccctgacgatatcccagccgaggcgctcgccgccctcgaggacggtcgcatcgactgc
gccaccttcacctcctcctccaccgtgcagaacttggccgccatcctgggcgagaaccgg
ttcctgcatctgatgcaaggagtaaaggtcgcctccatcggccccatcacctccaagacc
tgccgggatctggggcttgaggtgcacatggagcccgccgagtacacgctcgacgcgctg
gccgcggagatgatcgaatattttcgcgcaggggaattacggtaa

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