KEGG   Citrifermentans bemidjiense: Gbem_3092
Entry
Gbem_3092         CDS       T00749                                 
Symbol
dnaE-1
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
gbm  Citrifermentans bemidjiense
Pathway
gbm03030  DNA replication
gbm03430  Mismatch repair
gbm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gbm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Gbem_3092 (dnaE-1)
   03430 Mismatch repair
    Gbem_3092 (dnaE-1)
   03440 Homologous recombination
    Gbem_3092 (dnaE-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gbm03032]
    Gbem_3092 (dnaE-1)
   03400 DNA repair and recombination proteins [BR:gbm03400]
    Gbem_3092 (dnaE-1)
Enzymes [BR:gbm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Gbem_3092 (dnaE-1)
DNA replication proteins [BR:gbm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Gbem_3092 (dnaE-1)
DNA repair and recombination proteins [BR:gbm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Gbem_3092 (dnaE-1)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: ACH40094
UniProt: B5E8T0
Position
complement(3577261..3580731)
AA seq 1156 aa
MDSTNFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDK
GVKPILGSEVYIAPQDRFLKQAPSSPGQASSYHLILLCENMTGFKNLSYLVSAGYKEGFY
RRPRIDKELLLKHKEGLIVLSACLQGEVAYLAGRNKMDEARAAASWYAENFPGSYYIELQ
ENKLPEQDIANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDPTHM
AFSVDEFYVKTPQEMAQAFHYAPEAIENTVKIAERCNLEFDFKTYYFPAYEAPEGETLDQ
QLEREATVGLVERLKKIRIKYNLTEEQEQAYHARLRIELDCIKQMGFPGYFLIVADFINW
AKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQDR
REEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLVPEVLGIT
LDKALEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEFCPVYK
DQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFDITLLRDDDE
ESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVDDFIER
KHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGKKDAEQ
MAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAFLKAHYP
VEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVLDKAMRFGLGAVKN
VGEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGAFDCTGAKRSQLMAG
LEDAASAGQRVQQERESAQASLFGAAEIVRGANGGGNRLPEIPEWDEKYRLGCEKEAIGF
FITGHPLDRYVADMRRFSSVDCSTILDAKEKSEVRICGVPASVKELITKKGDRMAFLALE
DLVGSVEVVVFPETYAKCSEVLRGDDPIHVTGTVELSEKGAKVMASDIVLLRDLVERETR
KVNFTIDAKEVDEGKLKTLKDIISRYQGICRSFLHLDIENSSRVTIKLPDVYKVSASEEL
TVEVSNLFGYNAVSFE
NT seq 3471 nt   +upstreamnt  +downstreamnt
atggattcaacaaatttcgttcacctccatctccactcccagtactcgctcctcgacggg
gcgatccgcatcggtgacctcctgaagaaggtgaaggagtgccacatgccggccgtggcc
atgaccgaccacggcaacatgttcggcacccttgagttctatttgaagtgcaaggacaaa
ggggtcaagccgatcctggggagcgaggtgtacatagcgcctcaggacaggttcttgaag
caggctccctccagccccggccaggcctccagctaccacctgatccttttgtgcgaaaac
atgaccggcttcaagaacctctcctatctggtatccgcaggatacaaggaagggttctac
cgccgcccccgcatcgacaaggagctccttctgaagcacaaggaggggctcatcgtcctc
tccgcctgcctgcagggggaggtggcgtaccttgccggcaggaacaagatggacgaggcg
cgcgcagcggcctcctggtacgccgagaatttccccggtagctattacatcgagctgcag
gagaacaagctcccggagcaggacatcgccaaccgcaggctcatggagatcgcgcgtgag
atggacctgccgctcgtcgccaccaacgactgccattacctgaaccgcgaagacgcgagg
gcccacgagatcctcctctgcatccagaccggcaagaccatgagcgacccgacccacatg
gcgttctccgtggacgagttctatgtgaagacgccgcaggagatggcgcaggcgtttcat
tacgccccggaggcgattgagaacacggtcaagatcgccgagcgctgcaacctcgaattc
gacttcaagacctactacttccccgcctacgaggcccctgaaggggagacgctggaccag
cagctggagcgcgaggcgaccgtcggcctcgtcgagcggctgaaaaagatccgcatcaag
tacaacttgaccgaagagcaggaacaggcctaccacgcccgtctgcgcatcgagctggac
tgcatcaagcagatggggttcccgggctacttcctgatcgtcgccgacttcatcaactgg
gccaaagaccacggcatccccgtcggcccgggcaggggttccgcggcgggctctctcgtc
gccttctgcatcaggatcaccgacatcgatcccatgccgtacaacctcctcttcgagcgc
ttcctgaacccggaacgtatctccatgcctgatatcgacgtcgacttctgccaggatcgc
cgcgaagaggtgatccagtacatggtcgagaagtacggccgggagaaggtctgccagatc
atcaccttcggtaccatggcggcgcgcggcgtcatccgcgacgtcgggcgcgcgctcgac
cttaccttcggcgaggtggaccggatcgcgaagctggtccccgaggtgctcggcatcacg
ctggataaggcgctggagcaggagccgaagctgaaggagctgatggcggccgacccgaag
gtgaaggaggtcatgaccgtcgcgctcaggctggaggggcttgcccgccatgcctctacg
catgcggccggcctcgtggtggcacccaggcagatggaggaattctgcccggtctacaag
gaccagaagaccggctccttgaccacgcagtactcgatgaagtacgtggagaagatcggc
ctggtgaagttcgacttcctcgggctcaagaacctgaccgttatcgacaacgcctgcaag
cacatcagaaacggcaaggaccccaacttcgacatcacgcttttgcgcgacgacgacgag
gaatcctacaagctcctgcaggccggcaacacgacaggcgtgttccagctggagtccagc
ggcatgaaggagctcctggtcaagttgaagccctcctgcttcgaggacatcatcgcggtc
tgcgccctctaccgtccgggccccttgggcagcggcatggtggacgacttcatcgaaaga
aagcacggccgcaagcagaccgtctacgacctgccgcagcttgagccggtcctgaaagac
acctacggcgtcatcgtctaccaggaacaggtcatgcagatctcccgatcgctcgccggc
tactcgcttgggggcgcggacctcctgcgccgcgccatgggtaagaaggacgccgagcag
atggcgaaggagcgcgacaagttcctggaggggtccgagaagctcggcctggacgggaag
aagtgcgccgccatcttcgacctgatggcgaagttcgccgagtacggcttcaacaagtcg
cactcggccgcctacgccctggtcgcctaccagaccgcgttcctcaaggcccactacccg
gtcgagttcatggctgccctcttgaccgaggacatggggaacaccgacaaggtcattaag
agcatcggcgactgccgcgagatggggatcgaggtgctcccccccgacatcaacgagtcg
gaccgttccttccgcgtgctggacaaggcgatgcgcttcggtctgggcgccgtgaagaac
gtgggcgaaggcgccatcgaggcgatcatcgaggcgcgcggcgacgagcctttcaaggac
ctcttcgatttctgcgagcgcgtcgacctgcgccgggtcaacaaaagggtgatagaggcg
ctcatcaagtgcggcgccttcgactgcaccggggccaaacgctcccagctcatggcgggg
ctggaggatgccgcgtccgccgggcagagggtgcagcaggagcgagagagcgctcaggcg
tcgcttttcggcgcggccgagatcgtgcgcggcgccaacggcggcggcaaccggcttccc
gagatacccgagtgggacgagaagtaccggctggggtgcgagaaggaggcgatcggcttc
ttcatcaccgggcatccgctggaccgctacgtcgccgacatgaggcgcttctccagcgtg
gactgctccaccatcctggacgccaaggaaaagagcgaggtgaggatatgcggcgtgccg
gccagcgtcaaggagctgatcaccaagaaaggggaccggatggccttcctcgcgctggag
gacctggtgggctcggtcgaggtggtggtctttccggaaacctacgccaagtgctccgag
gtgctcaggggggacgatcccatccacgtcaccggcaccgttgagctgagtgagaagggg
gccaaggtgatggcgagcgacatcgtccttctgcgcgacctggttgagcgtgaaacgagg
aaggtcaatttcaccatagacgccaaagaggtcgacgaaggaaagctcaaaacgctcaaa
gacatcatctcccgctatcagggaatctgtcgcagcttcctgcaccttgacatagagaac
agctccagagtcaccatcaagcttcccgatgtatacaaagtctcggcaagtgaagaatta
acagtggaagtgagcaacctcttcggctataatgccgtgtctttcgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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