KEGG   Gordonia bronchialis: Gbro_2058
Entry
Gbro_2058         CDS       T01102                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
gbr  Gordonia bronchialis
Pathway
gbr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gbr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Gbro_2058
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gbr03019]
    Gbro_2058
   03009 Ribosome biogenesis [BR:gbr03009]
    Gbro_2058
Enzymes [BR:gbr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Gbro_2058
Messenger RNA biogenesis [BR:gbr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Gbro_2058
Ribosome biogenesis [BR:gbr03009]
 Prokaryotic type
  rRNA processing factors
   Gbro_2058
SSDB
Motif
Pfam: RNase_E_G IF2_N S1
Other DBs
NCBI-ProteinID: ACY21310
UniProt: D0LAJ7
Position
2186293..2189664
AA seq 1123 aa
MTDNGSPADANAASGAAEEFPSRLRVHALARILGMTSREVLAHLAELGAEIRSAQSSVDR
ELAQAVADRVRHHVEVDDASLAAVDATSTETPPTAPETPTTAPESAPTAPESAPTAPEDA
PTAPEDAPTAPEDAPTALEDAPTAPDPTPETAVTAADRGPETPSLFSAASAQYDHPIAGD
VPALAAGPLFLQPQAPEPSAERTRDTSARAGSASSDIQGGDTKGGEEQNADDNGADDTDG
HDDAGKDSGDDTESNRNRRRRRGRRGRGRGRGEQGADDQGADDADEQAGGDQNRADQNRA
DQNGADTVDSGEDTDVTSDGGSDPESEDEKDAGESGARKKAGRPSGKKGKRSKNKKVAEE
DDAGTDDSDAEDTGESDDAEDSDAEADGNGEGSTRRRRRRRRRKGGADAEDASPDDPPNT
VVHEREPRSKRVRDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPILTESEFLARREAVDR
VMVVRERGANSRIAPGTGDDGHEHATPIEDYTQVAVLEDGVLVEHFVTTATSSSMVGNIY
LGRVQNVLPGMEAAFVDIGRGRNGVLYAGEVNWDAAGLDGGSRKIEQALKPGDNVLVQVS
KDPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRKLPDVERKRLKQILAKLVPADAGVI
IRTASEGVSAEELGADIARLEAKWRSIDESVTQAKKNSGSAGPKALYEEPDLLVRVVRDL
FNEDFKKLVVEGAKAWNLVEGYVGSVAPDLMDRVEKFEKPHADAPDSFVVHRIDEQLAKA
LDRKVWLPSGGTLIIEHTEAMTVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLR
DIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLL
EAFSTTCTTCGGRGVIVHANPVEVRSEEAGRVEGGSKRSRRGKRKPEAAPEHKPAHHPAE
HPMFRAMAAHSHDDPEHVAHDSDAAPDSAAEASDSAAEASDSAAEASDSAAAASDSTAAA
PESTPKTPESTPTTPPSTSGPAAEGDGSPRRRRRVVRRAASPTAAPEPMVLTAAPDGQGD
AAPTPVTTFGPVSPTSAESAVAVRRRPRRRSAGRPAGPPPGEQ
NT seq 3372 nt   +upstreamnt  +downstreamnt
gtgaccgacaacgggtcgccggctgacgcgaacgcagcgtcaggagcggcggaagaattt
cccagcagacttcgtgtgcacgccctggccaggatcctgggcatgaccagccgcgaggtg
cttgcgcatctggctgagttgggcgcggagatccgcagcgcacaatcgagcgtcgaccgt
gaactcgcacaggcggtggccgaccgcgtgcgccaccacgtggaggtcgacgacgcctcc
ctggccgccgtcgacgcgacgtccaccgagacaccgccaacggcgcctgagacaccgacg
acggcgccggaaagtgcaccgacggcaccggaaagtgcaccgacggcaccggaagatgcg
ccgacggcaccggaagatgcgccgacggcaccggaagatgcgccgacagcactggaagat
gcgccgacggcaccggacccgacacctgagaccgcagtgacggccgccgatcgcgggccc
gagacaccgagtctcttctcagcggcgtcggcgcagtacgaccatccgatcgccggcgac
gttccggcactggccgcggggcctctgttcctgcagccgcaggctcctgaaccgagtgcc
gagcgcacccgcgacacctcggctcgtgccggaagcgcaagctccgacattcagggcggc
gacaccaagggcggcgaggagcagaacgccgacgacaacggcgccgacgacaccgatggt
cacgacgacgccggcaaggattcgggcgacgacaccgagtcgaatcgcaaccgcaggcgt
cgtcgaggccgccgcggacgtggccgcggtcgtggtgagcagggcgccgacgatcagggt
gccgacgacgccgacgagcaggccggcggtgatcagaatcgggccgaccagaacagggcc
gaccagaacggggccgacaccgtcgactccggcgaggacaccgacgtcacgagcgatggc
ggaagcgaccctgagtccgaggatgagaaggacgcgggagagtcgggcgccaggaagaag
gccggccggccgtcgggcaagaagggtaaacggtccaagaacaagaaggtcgccgaggag
gacgacgccggtaccgacgactccgacgccgaggacaccggagagtcggatgacgccgag
gactccgacgccgaagcggacgggaacggtgagggctcgacgcgtcgtcgccgccgtcgc
cgtcgtcgcaagggcggtgccgatgccgaggatgcgtcccccgacgatccgccgaacaca
gtcgtgcacgagcgggaaccgcgtagtaaacgagtccgtgacgaggtccaggggatttcc
ggatccacccgactcgaggccaaacgccagcgtcgccgggacgggcgggatgcggggcgt
cgccgaccgccgatcctgaccgaatccgagttcctggcccgccgcgaggccgtagaccgc
gtgatggtggtgcgtgaacgcggcgccaacagccgcatcgcacccggtaccggcgacgac
ggtcatgagcacgccaccccgatcgaggactacacgcaggtcgccgtgctcgaggacggc
gtcctcgtcgaacacttcgtgaccacggcgacctcgtcgtcgatggtcggcaacatctat
ctcgggcgggtgcagaacgtcctgcccgggatggaggccgccttcgtcgacatcgggcgc
ggacgcaacggtgtgctctatgccggcgaggtgaactgggatgcggccggcctcgacggc
ggttcacgcaagatcgagcaggccctcaaacccggcgacaatgtgctcgtccaggtcagc
aaggacccggtgggccacaagggtgcgcgtctgaccacgcagatctcgctggccggccgt
tatctcgtgtacgtgcccggcggttcgtcgaccggaatcagccgcaagctgcccgacgtc
gaacgcaaacgcctcaagcagatcctggccaagctcgtgccggccgacgccggcgtcatc
atccggaccgcgtccgagggtgtcagcgctgaggaactcggcgccgacatcgcgcgtctg
gaagccaagtggcgttctatcgacgaatcggtcacccaggccaagaagaactccggttcg
gccgggccaaaggcgctctacgaggaaccagacctgctggttcgggtggtgcgtgacctg
ttcaacgaggacttcaagaaactcgtcgtcgagggtgccaaggcatggaacctcgtcgag
gggtacgtcggctccgtcgcgcccgacctgatggatcgcgttgagaagttcgagaaaccg
cacgccgatgcgccggattcctttgtggtgcaccgcatcgacgagcaattggcgaaggcg
ctcgaccgcaaggtgtggctgccttcgggtggcacgctgatcatcgagcacaccgaggcg
atgacggtcgtcgacgtcaacacgggcaagttcaccggttcgggtggcaacctcgaggag
acggtgacccggaacaacctcgaagcggccgaggagatcgtgcgccagatgcggctgcgc
gacatcggcggcatgatcatcgtcgatttcatcgacatggtcctcgagtccaaccgcgac
ctggtgctgcgacggctcaccgaggcgctggcccgtgaccggactcgccatcaggtctcc
gaggtgacttcgctgggtctggtccagatgacgcgcaagcgactgggtacggggctgctc
gaggcgttctcgacgacatgcaccacttgcggtggacgcggtgtcatcgtgcacgccaac
ccggtggaggtgcgctccgaggaggccggacgcgtcgaaggcggttccaagcggtcgcgt
cgcggcaaacggaagcccgaggccgcgcccgaacacaaaccggcacaccatcccgccgag
cacccgatgttccgggcgatggccgcgcactcccacgacgaccccgaacacgtcgcacac
gactccgacgcggcaccggattccgcggcggaggcatcggattccgcggcggaggcatcg
gattccgcggcggaggcatcggattccgcggcggcggcatcggattcgacggcggcggca
ccggaatccacgccgaagacacccgaatccacgccgacgacaccgccgtcgacgagtgga
cccgcggccgagggcgacggatcaccgcggcgccgtcgtcgtgtggtccgccgggcggca
tcgcccactgcggcaccggaaccgatggtgctcaccgctgcgccggacggacagggcgac
gccgccccgaccccggtcacgacattcggtccggtgtcaccgaccagcgccgagtcggcc
gtggcggtccgcagacggccacggcgccgctccgcgggacgaccggccggtccgccgccc
ggcgagcagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (56)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (70)   

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