KEGG T01102: Gbro

Gordonia bronchialis: Gbro_3272

Entry

Gbro_3272 CDS T01102

Definition

DNA polymerase LigD

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

gbr Gordonia bronchialis

Pathway

gbr03410	Base excision repair
gbr03420	Nucleotide excision repair
gbr03430	Mismatch repair
gbr03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:gbr03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:gbr03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:gbr03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:gbr03450]

SSDB

Motif

Pfam:

DNA_primase_S

Other DBs

NCBI-GI:

262203161

NCBI-GeneID:

8552647

UniProt:

D0LCY3

Position

3500668..3501654

AA seq 328 aa
MSPDASAGEPVVLTVGDRPVRISSPDRVYFPERGETKMDLVEYYLSVGDGIVRALRERPC
MLHRFPKGVTGKKVHQKRVPAGAPDWLETTEIYFPRYGRTADELCVTELASVIWAVQMST
VEFHPWNSRRADPESPDEWRIDLDPMPDCPFSRIQRVAGVVHEVLDELGMRGFPKTSGGR
GLHIYVRIEPDWGFPDVRRAALAFAREVEWRAPDDVTTTWWRKDRDPAAVFVDYNQNTRD
HTMASAYSVRGNPRATVSAPVTWSEIDDIEPDDFTIATMPARFADLGDLHAEIDDVAHRI
DTLLAWAERDELDGDTSDGPESVDLDGS

NT seq 987 nt +upstreamnt +downstreamnt
atgagcccggatgcgtccgcaggcgaacccgtcgtcctgaccgtgggtgatcggccggta
cggatctcgagccccgatcgcgtgtactttcccgagcgcggtgagaccaagatggacctg
gtcgagtactacctgtcggtaggtgacggcatcgtccgggcactgcgcgagcggccatgc
atgctgcaccgcttccccaagggcgtgaccgggaagaaggttcatcagaagcgggtgccg
gccggggcacccgactggctggagaccaccgagatctatttcccgcgctacggacgcacc
gccgacgaactgtgcgtcaccgagttggcgtcggtgatctgggcggtacagatgtcgacc
gtcgagttccatccgtggaactcacggcgcgccgacccggaatctcccgacgagtggcgc
atcgacctcgacccgatgcccgactgcccgttctcccgcatccagcgggtcgccggggtg
gtccacgaagtgctcgacgaactcggaatgcggggcttccccaagacgtccggcggtcgg
ggcctgcacatctacgtccgcatcgaacccgactgggggttccccgacgtccggcgggcc
gcgctggcattcgcgcgtgaggtcgagtggcgcgcgcccgacgacgtgaccaccacgtgg
tggcgcaaggaccgtgatccggcggcggtcttcgtcgactacaaccagaacacccgcgat
cacacgatggcgtcggcctactcggtccgcggcaatccgcgcgcgaccgtatccgcgccc
gtgacgtggtcggagatcgatgacatcgaacccgacgacttcaccatcgccaccatgccg
gcccgcttcgccgatctcggcgatctccatgccgagatcgacgacgtcgcccaccgcatc
gacaccttgctggcgtgggccgaacgcgacgaactcgacggcgacacctcggacggcccc
gagagcgtggatctcgacggctcctaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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